Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | TsdAT/- |
Location | 655070..655588 | Replicon | chromosome |
Accession | NZ_CP020406 | ||
Organism | Staphylococcus lugdunensis strain FDAARGOS_222 |
Toxin (Protein)
Gene name | TsdT | Uniprot ID | - |
Locus tag | A6J61_RS03055 | Protein ID | WP_002478973.1 |
Coordinates | 655376..655588 (+) | Length | 71 a.a. |
Antitoxin (Protein)
Gene name | TsdA | Uniprot ID | A0A853V130 |
Locus tag | A6J61_RS03050 | Protein ID | WP_002492098.1 |
Coordinates | 655070..655363 (+) | Length | 98 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
A6J61_RS03030 | 650676..651314 | + | 639 | WP_002461213.1 | thiamine phosphate synthase | - |
A6J61_RS03035 | 651404..652279 | + | 876 | WP_002461212.1 | membrane protein insertase YidC | - |
A6J61_RS03040 | 652657..653298 | - | 642 | WP_070647978.1 | HD domain-containing protein | - |
A6J61_RS03045 | 653420..654904 | - | 1485 | WP_070647977.1 | cardiolipin synthase | - |
A6J61_RS03050 | 655070..655363 | + | 294 | WP_002492098.1 | copper-sensing transcriptional repressor CsoR | Antitoxin |
A6J61_RS03055 | 655376..655588 | + | 213 | WP_002478973.1 | heavy-metal-associated domain-containing protein | Toxin |
A6J61_RS03060 | 655679..655816 | + | 138 | WP_002461206.1 | hypothetical protein | - |
A6J61_RS03065 | 656230..657420 | - | 1191 | WP_002461205.1 | rod shape-determining protein RodA | - |
A6J61_RS03070 | 657776..658846 | + | 1071 | WP_002461204.1 | D-alanine--D-alanine ligase | - |
A6J61_RS03075 | 658864..660222 | + | 1359 | WP_062077884.1 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 71 a.a. Molecular weight: 8070.03 Da Isoelectric Point: 3.9947
>T74611 WP_002478973.1 NZ_CP020406:655376-655588 [Staphylococcus lugdunensis]
VEKRLIYITNVTSEDDLENLRTRLLEMIGVNEVVINFDERAVNVTFETPTNLNALEKEIYDAGYHAIDDL
VEKRLIYITNVTSEDDLENLRTRLLEMIGVNEVVINFDERAVNVTFETPTNLNALEKEIYDAGYHAIDDL
Download Length: 213 bp
>T74611 NZ_CP020406:655376-655588 [Staphylococcus lugdunensis]
GTGGAAAAGCGATTAATTTATATTACAAATGTGACTAGTGAAGACGACTTGGAAAACTTACGAACAAGGTTATTAGAGAT
GATTGGTGTTAATGAAGTAGTGATCAATTTTGATGAACGTGCAGTTAATGTTACTTTTGAAACACCAACTAATTTAAATG
CACTTGAAAAAGAAATATATGATGCTGGCTATCATGCTATAGATGATTTATAA
GTGGAAAAGCGATTAATTTATATTACAAATGTGACTAGTGAAGACGACTTGGAAAACTTACGAACAAGGTTATTAGAGAT
GATTGGTGTTAATGAAGTAGTGATCAATTTTGATGAACGTGCAGTTAATGTTACTTTTGAAACACCAACTAATTTAAATG
CACTTGAAAAAGAAATATATGATGCTGGCTATCATGCTATAGATGATTTATAA
Antitoxin
Download Length: 98 a.a. Molecular weight: 11177.85 Da Isoelectric Point: 6.6367
>AT74611 WP_002492098.1 NZ_CP020406:655070-655363 [Staphylococcus lugdunensis]
MNEQDHAHHSKIVKANLKSRLNRIEGQVRAINRMVEDDVYCDDVLTQIRATRSALTSVATKLLEHHMKSCIMDKINDGQE
VEAMEELLVTFQKMLKD
MNEQDHAHHSKIVKANLKSRLNRIEGQVRAINRMVEDDVYCDDVLTQIRATRSALTSVATKLLEHHMKSCIMDKINDGQE
VEAMEELLVTFQKMLKD
Download Length: 294 bp
>AT74611 NZ_CP020406:655070-655363 [Staphylococcus lugdunensis]
TTGAACGAACAAGATCATGCACATCATTCTAAAATTGTAAAAGCAAATTTAAAATCTAGATTAAATCGTATAGAAGGACA
AGTGCGGGCAATTAATCGCATGGTTGAAGATGATGTTTATTGTGATGATGTGTTAACACAAATAAGAGCAACACGCTCAG
CATTAACGAGTGTAGCAACAAAACTATTAGAGCATCATATGAAAAGTTGTATCATGGATAAAATAAACGATGGGCAGGAA
GTTGAAGCGATGGAGGAATTGCTAGTTACATTTCAAAAAATGCTAAAAGATTAG
TTGAACGAACAAGATCATGCACATCATTCTAAAATTGTAAAAGCAAATTTAAAATCTAGATTAAATCGTATAGAAGGACA
AGTGCGGGCAATTAATCGCATGGTTGAAGATGATGTTTATTGTGATGATGTGTTAACACAAATAAGAGCAACACGCTCAG
CATTAACGAGTGTAGCAACAAAACTATTAGAGCATCATATGAAAAGTTGTATCATGGATAAAATAAACGATGGGCAGGAA
GTTGAAGCGATGGAGGAATTGCTAGTTACATTTCAAAAAATGCTAAAAGATTAG
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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