Detailed information of TA system TA074424

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 1850974..1851245
• Replicon: chromosome
• Accession: NZ_CP020368
• Organism: Escherichia coli strain BLR(DE3)

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	1851012..1851115 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	1850974..1851245 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
B5762_RS09795	1848131..1849570	+	1440	WP_000057022.1	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	-
B5762_RS09800	1849688..1849924	+	237	WP_001295499.1	DUF1480 family protein	-
B5762_RS09805	1850029..1850220	+	192	WP_001296140.1	YebW family protein	-
B5762_RS09810	1850221..1850877	-	657	WP_000812724.1	protein-serine/threonine phosphatase	-
-	1850974..1851245	+	272	-	-	Antitoxin
-	1851012..1851115	-	104	-	-	Toxin
B5762_RS09815	1851272..1851613	-	342	WP_000976472.1	YebY family protein	-
B5762_RS09820	1851626..1852498	-	873	WP_000879293.1	copper homeostasis membrane protein CopD	-
B5762_RS09825	1852502..1852876	-	375	WP_000168747.1	CopC domain-containing protein YobA	-
B5762_RS09830	1853015..1853245	+	231	WP_000916763.1	DNA polymerase III subunit theta	-
B5762_RS09835	1853347..1854003	+	657	WP_000011657.1	carbon-nitrogen hydrolase family protein	-
B5762_RS09840	1854027..1854689	+	663	WP_000944245.1	exodeoxyribonuclease X	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 104 bp

>T74424 NZ_CP020368:c1851115-1851012 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin

Nucleotide

• Length: 272 bp

>AT74424 NZ_CP020368:1850974-1851245 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Antitoxin