Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/AbrB(antitoxin) |
Location | 1708799..1709302 | Replicon | chromosome |
Accession | NZ_CP020360 | ||
Organism | Sulfolobus acidocaldarius strain Y14 18-5 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | B6A18_RS11930 | Protein ID | WP_162465564.1 |
Coordinates | 1709147..1709302 (+) | Length | 52 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | M1I7E0 |
Locus tag | B6A18_RS09485 | Protein ID | WP_011278775.1 |
Coordinates | 1708799..1709041 (+) | Length | 81 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
B6A18_RS09465 | 1704311..1705798 | + | 1488 | WP_230949672.1 | AMP-binding protein | - |
B6A18_RS09470 | 1705785..1706903 | + | 1119 | WP_011278772.1 | arabinonate dehydratase | - |
B6A18_RS09475 | 1706905..1708065 | + | 1161 | WP_011278773.1 | thiolase family protein | - |
B6A18_RS09480 | 1708058..1708402 | + | 345 | WP_011278774.1 | zinc ribbon domain-containing protein | - |
B6A18_RS09485 | 1708799..1709041 | + | 243 | WP_011278775.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
B6A18_RS11930 | 1709147..1709302 | + | 156 | WP_162465564.1 | hypothetical protein | Toxin |
B6A18_RS09490 | 1709761..1711086 | + | 1326 | WP_015385888.1 | APC family permease | - |
B6A18_RS09495 | 1711245..1713491 | + | 2247 | WP_011278777.1 | MMPL family transporter | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 52 a.a. Molecular weight: 5963.78 Da Isoelectric Point: 4.1435
>T74387 WP_162465564.1 NZ_CP020360:1709147-1709302 [Sulfolobus acidocaldarius]
VEIAYFLVKNGIEVRSVIESTLSDPKVEVIENILEDLYFAIRSEPRKYDDF
VEIAYFLVKNGIEVRSVIESTLSDPKVEVIENILEDLYFAIRSEPRKYDDF
Download Length: 156 bp
>T74387 NZ_CP020360:1709147-1709302 [Sulfolobus acidocaldarius]
GTGGAAATTGCTTACTTCTTGGTGAAGAATGGGATTGAAGTCAGGAGCGTCATAGAGAGTACACTCAGTGACCCTAAAGT
GGAAGTTATCGAGAACATCCTTGAGGACTTGTATTTTGCAATAAGGAGTGAGCCAAGAAAATATGATGACTTTTAA
GTGGAAATTGCTTACTTCTTGGTGAAGAATGGGATTGAAGTCAGGAGCGTCATAGAGAGTACACTCAGTGACCCTAAAGT
GGAAGTTATCGAGAACATCCTTGAGGACTTGTATTTTGCAATAAGGAGTGAGCCAAGAAAATATGATGACTTTTAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 9009.48 Da Isoelectric Point: 8.9835
>AT74387 WP_011278775.1 NZ_CP020360:1708799-1709041 [Sulfolobus acidocaldarius]
MFEESRVTRNYRITIPATIRQKLGIRVGDKLIVYTEGDKIILVKKKGDLVSLNLKLGRKFTDEEVNKVIEEAGEEVGGSC
MFEESRVTRNYRITIPATIRQKLGIRVGDKLIVYTEGDKIILVKKKGDLVSLNLKLGRKFTDEEVNKVIEEAGEEVGGSC
Download Length: 243 bp
>AT74387 NZ_CP020360:1708799-1709041 [Sulfolobus acidocaldarius]
ATGTTTGAAGAGAGCAGAGTCACCAGGAATTACCGAATAACAATACCAGCTACTATCAGGCAAAAACTGGGAATCAGGGT
CGGTGATAAACTCATAGTGTATACCGAGGGTGATAAAATAATACTGGTCAAAAAGAAGGGTGACTTAGTGTCCTTAAACC
TAAAGTTAGGTAGGAAGTTTACTGATGAAGAGGTCAATAAAGTAATAGAGGAAGCAGGAGAGGAAGTTGGAGGGAGTTGT
TGA
ATGTTTGAAGAGAGCAGAGTCACCAGGAATTACCGAATAACAATACCAGCTACTATCAGGCAAAAACTGGGAATCAGGGT
CGGTGATAAACTCATAGTGTATACCGAGGGTGATAAAATAATACTGGTCAAAAAGAAGGGTGACTTAGTGTCCTTAAACC
TAAAGTTAGGTAGGAAGTTTACTGATGAAGAGGTCAATAAAGTAATAGAGGAAGCAGGAGAGGAAGTTGGAGGGAGTTGT
TGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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