Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1304336..1304504 | Replicon | chromosome |
| Accession | NZ_CP020358 | ||
| Organism | Klebsiella oxytoca strain AR_0147 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1304343..1304446 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1304336..1304504 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM394_RS06350 | 1299610..1300128 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| AM394_RS06355 | 1300147..1300911 | + | 765 | WP_025106133.1 | molecular chaperone | - |
| AM394_RS06360 | 1300914..1303244 | + | 2331 | WP_047723554.1 | fimbrial biogenesis outer membrane usher protein | - |
| AM394_RS06365 | 1303259..1304218 | + | 960 | WP_047723552.1 | spore coat U domain-containing protein | - |
| - | 1304336..1304504 | + | 169 | - | - | Antitoxin |
| - | 1304343..1304446 | - | 104 | - | - | Toxin |
| AM394_RS06370 | 1304603..1304941 | - | 339 | WP_004103344.1 | YebY family protein | - |
| AM394_RS06375 | 1304958..1305827 | - | 870 | WP_047723551.1 | copper homeostasis membrane protein CopD | - |
| AM394_RS06380 | 1305832..1306206 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| AM394_RS06385 | 1306342..1306572 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| AM394_RS06390 | 1306651..1307310 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| AM394_RS06395 | 1307317..1309377 | - | 2061 | WP_033836507.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74372 NZ_CP020358:c1304446-1304343 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT74372 NZ_CP020358:1304336-1304504 [Klebsiella oxytoca]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
