Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1844529..1844797 | Replicon | chromosome |
| Accession | NZ_CP020116 | ||
| Organism | Escherichia coli strain AR_0104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1844657..1844759 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1844529..1844797 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM483_RS09360 | 1841082..1841744 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM483_RS09365 | 1841768..1842424 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AM483_RS09370 | 1842526..1842756 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM483_RS09375 | 1842895..1843269 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AM483_RS09380 | 1843273..1844145 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| AM483_RS09385 | 1844158..1844499 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1844529..1844797 | - | 269 | - | - | Antitoxin |
| - | 1844657..1844759 | + | 103 | - | - | Toxin |
| AM483_RS09395 | 1844894..1845550 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| AM483_RS09400 | 1845551..1845742 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AM483_RS09405 | 1845847..1846083 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM483_RS09410 | 1846200..1847639 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T74185 NZ_CP020116:1844657-1844759 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT74185 NZ_CP020116:c1844797-1844529 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
