Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4712629..4712774 | Replicon | chromosome |
| Accession | NZ_CP020108 | ||
| Organism | Klebsiella pneumoniae strain AR_0098 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4712665..4712767 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4712629..4712774 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM477_RS23765 | 4707759..4709819 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| AM477_RS23770 | 4709823..4710482 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM477_RS23775 | 4710561..4710791 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM477_RS23780 | 4710904..4711278 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM477_RS23785 | 4711282..4712151 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| AM477_RS23790 | 4712168..4712506 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4712629..4712774 | - | 146 | - | - | Antitoxin |
| - | 4712665..4712767 | + | 103 | - | - | Toxin |
| AM477_RS29535 | 4713142..4713285 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AM477_RS23800 | 4713390..4714358 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM477_RS23805 | 4714515..4715168 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| AM477_RS23810 | 4715165..4715356 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AM477_RS23815 | 4715454..4715693 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AM477_RS23820 | 4715809..4717242 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T74163 NZ_CP020108:4712665-4712767 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT74163 NZ_CP020108:c4712774-4712629 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
