Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2220894..2221165 | Replicon | chromosome |
| Accession | NZ_CP020107 | ||
| Organism | Escherichia coli strain 13E0767 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2221024..2221127 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2220894..2221165 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC767_RS11145 | 2217449..2218111 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EC767_RS11150 | 2218135..2218791 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EC767_RS11155 | 2218893..2219123 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC767_RS11160 | 2219262..2219636 | + | 375 | WP_024243787.1 | CopC domain-containing protein YobA | - |
| EC767_RS11165 | 2219640..2220512 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EC767_RS11170 | 2220525..2220866 | + | 342 | WP_024243786.1 | YebY family protein | - |
| - | 2220894..2221165 | - | 272 | - | - | Antitoxin |
| - | 2221024..2221127 | + | 104 | - | - | Toxin |
| EC767_RS11175 | 2221262..2221918 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EC767_RS11180 | 2221919..2222110 | - | 192 | WP_000457842.1 | YebW family protein | - |
| EC767_RS11185 | 2222215..2222451 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC767_RS11190 | 2222569..2224008 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74137 NZ_CP020107:2221024-2221127 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT74137 NZ_CP020107:c2221165-2220894 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
