Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2337413..2337684 | Replicon | chromosome |
| Accession | NZ_CP020092 | ||
| Organism | Escherichia coli strain 13E0725 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2337543..2337646 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2337413..2337684 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC725_RS12295 | 2333968..2334630 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EC725_RS12300 | 2334654..2335310 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| EC725_RS12305 | 2335412..2335642 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC725_RS12310 | 2335781..2336155 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EC725_RS12315 | 2336159..2337031 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| EC725_RS12320 | 2337044..2337385 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2337413..2337684 | - | 272 | - | - | Antitoxin |
| - | 2337543..2337646 | + | 104 | - | - | Toxin |
| EC725_RS12325 | 2337781..2338437 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| EC725_RS12330 | 2338438..2338629 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EC725_RS12335 | 2338734..2338970 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC725_RS12340 | 2339088..2340527 | - | 1440 | WP_001443441.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74057 NZ_CP020092:2337543-2337646 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT74057 NZ_CP020092:c2337684-2337413 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
