Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3024541..3024692 | Replicon | chromosome |
| Accession | NZ_CP020089 | ||
| Organism | Enterobacter cloacae strain PIMB10EC27 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3024554..3024657 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3024541..3024692 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B2J95_RS14615 | 3020817..3022259 | + | 1443 | WP_038419909.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B2J95_RS14620 | 3022365..3022604 | + | 240 | WP_013096113.1 | YebV family protein | - |
| B2J95_RS14625 | 3022638..3023282 | - | 645 | WP_058678593.1 | protein-serine/threonine phosphatase | - |
| B2J95_RS14630 | 3023449..3024390 | + | 942 | WP_058678592.1 | VirK/YbjX family protein | - |
| - | 3024541..3024692 | + | 152 | - | - | Antitoxin |
| - | 3024554..3024657 | - | 104 | - | - | Toxin |
| B2J95_RS14635 | 3024798..3025136 | - | 339 | WP_013096105.1 | YebY family protein | - |
| B2J95_RS14640 | 3025153..3026022 | - | 870 | WP_058678591.1 | copper homeostasis membrane protein CopD | - |
| B2J95_RS14645 | 3026024..3026395 | - | 372 | WP_047352446.1 | CopC domain-containing protein YobA | - |
| B2J95_RS14650 | 3026533..3026763 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| B2J95_RS14655 | 3026873..3027523 | + | 651 | WP_038419917.1 | carbon-nitrogen hydrolase family protein | - |
| B2J95_RS14660 | 3027547..3028209 | + | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3015442..3057457 | 42015 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74033 NZ_CP020089:c3024657-3024554 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT74033 NZ_CP020089:3024541-3024692 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
