Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2534626..2534860 | Replicon | chromosome |
| Accession | NZ_CP020086 | ||
| Organism | Shigella flexneri 1a strain 0670 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2534756..2534859 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2534626..2534860 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4376_RS13510 | 2531181..2531843 | - | 663 | WP_000944268.1 | exodeoxyribonuclease X | - |
| B4376_RS13515 | 2531867..2532523 | - | 657 | Protein_2416 | carbon-nitrogen hydrolase family protein | - |
| B4376_RS13520 | 2532625..2532855 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B4376_RS13525 | 2532994..2533368 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| B4376_RS13530 | 2533372..2534244 | + | 873 | Protein_2419 | copper homeostasis membrane protein CopD | - |
| B4376_RS13535 | 2534257..2534598 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2534626..2534860 | - | 235 | - | - | Antitoxin |
| - | 2534756..2534859 | + | 104 | - | - | Toxin |
| B4376_RS28360 | 2534991..2536068 | - | 1078 | Protein_2421 | phage integrase Arm DNA-binding domain-containing protein | - |
| B4376_RS13550 | 2536034..2536315 | - | 282 | WP_005127484.1 | excisionase | - |
| B4376_RS13555 | 2536432..2537280 | - | 849 | Protein_2423 | IS3-like element IS600 family transposase | - |
| B4376_RS13560 | 2537335..2538070 | + | 736 | Protein_2424 | IS3 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T74007 NZ_CP020086:2534756-2534859 [Shigella flexneri 1a]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT74007 NZ_CP020086:c2534860-2534626 [Shigella flexneri 1a]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
