Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 2547305..2547924 Replicon chromosome
Accession NZ_CP020071
Organism Klebsiella pneumoniae strain AR_0115

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag AM362_RS12885 Protein ID WP_002892050.1
Coordinates 2547305..2547523 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag AM362_RS12890 Protein ID WP_002892066.1
Coordinates 2547550..2547924 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AM362_RS12855 2543352..2543615 + 264 WP_002892011.1 type B 50S ribosomal protein L31 -
AM362_RS12860 2543615..2543755 + 141 WP_002892018.1 type B 50S ribosomal protein L36 -
AM362_RS12865 2543752..2544450 - 699 WP_002892021.1 GNAT family N-acetyltransferase -
AM362_RS12870 2544551..2546002 + 1452 WP_002892023.1 PLP-dependent aminotransferase family protein -
AM362_RS12875 2545977..2546447 - 471 WP_002892026.1 YlaC family protein -
AM362_RS29550 2546468..2546608 + 141 WP_004147370.1 hypothetical protein -
AM362_RS12880 2546580..2547146 - 567 WP_002892030.1 maltose O-acetyltransferase -
AM362_RS12885 2547305..2547523 - 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
AM362_RS12890 2547550..2547924 - 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
AM362_RS12895 2548410..2551556 - 3147 WP_002892069.1 multidrug efflux RND transporter permease subunit AcrB -
AM362_RS12900 2551579..2552772 - 1194 WP_002892072.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T73970 WP_002892050.1 NZ_CP020071:c2547523-2547305 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T73970 NZ_CP020071:c2547523-2547305 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT73970 WP_002892066.1 NZ_CP020071:c2547924-2547550 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT73970 NZ_CP020071:c2547924-2547550 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References