Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 343884..344155 | Replicon | chromosome |
| Accession | NZ_CP020058 | ||
| Organism | Escherichia coli strain AR_0061 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 344014..344117 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 343884..344155 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM440_RS01800 | 340439..341101 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM440_RS01805 | 341125..341781 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| AM440_RS01810 | 341883..342113 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM440_RS01815 | 342252..342626 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| AM440_RS01820 | 342630..343502 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| AM440_RS01825 | 343515..343856 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 343884..344155 | - | 272 | - | - | Antitoxin |
| - | 344014..344117 | + | 104 | - | - | Toxin |
| AM440_RS01830 | 344252..344908 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| AM440_RS01835 | 344909..345100 | - | 192 | WP_001313035.1 | YebW family protein | - |
| AM440_RS01840 | 345205..345441 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM440_RS01845 | 345559..346998 | - | 1440 | WP_004016272.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T73898 NZ_CP020058:344014-344117 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT73898 NZ_CP020058:c344155-343884 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
