Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 67504..67775 | Replicon | chromosome |
| Accession | NZ_CP020055 | ||
| Organism | Escherichia coli strain AR_0069 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 67542..67645 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 67504..67775 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM448_RS00370 | 64661..66100 | + | 1440 | WP_080028909.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM448_RS00375 | 66218..66454 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM448_RS00380 | 66559..66750 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AM448_RS00385 | 66751..67407 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 67504..67775 | + | 272 | - | - | Antitoxin |
| - | 67542..67645 | - | 104 | - | - | Toxin |
| AM448_RS00390 | 67803..68144 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AM448_RS00395 | 68157..69029 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AM448_RS00400 | 69033..69407 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AM448_RS00405 | 69546..69776 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM448_RS00410 | 69878..70534 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AM448_RS00415 | 70558..71220 | + | 663 | WP_080028672.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T73876 NZ_CP020055:c67645-67542 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT73876 NZ_CP020055:67504-67775 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
