Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4770233..4770504 | Replicon | chromosome |
| Accession | NZ_CP020048 | ||
| Organism | Escherichia coli strain AR_0118 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4770363..4770466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4770233..4770504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM365_RS24730 | 4766788..4767450 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AM365_RS24735 | 4767474..4768130 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| AM365_RS24740 | 4768232..4768462 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AM365_RS24745 | 4768601..4768975 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AM365_RS24750 | 4768979..4769851 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| AM365_RS24755 | 4769864..4770205 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 4770233..4770504 | - | 272 | - | - | Antitoxin |
| - | 4770363..4770466 | + | 104 | - | - | Toxin |
| AM365_RS24760 | 4770601..4771257 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| AM365_RS24765 | 4771258..4771449 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AM365_RS24770 | 4771554..4771790 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AM365_RS24775 | 4771908..4773347 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T73848 NZ_CP020048:4770363-4770466 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT73848 NZ_CP020048:c4770504-4770233 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
