Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 3475683..3476212 Replicon chromosome
Accession NZ_CP020038
Organism Agarilytica rhodophyticola strain 017

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag BVC89_RS14550 Protein ID WP_086931888.1
Coordinates 3475922..3476212 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag BVC89_RS14545 Protein ID WP_086931887.1
Coordinates 3475683..3475919 (+) Length 79 a.a.

Genomic Context

BVC89_RS14530BVC89_RS14535BVC89_RS14540BVC89_RS14545BVC89_RS14550BVC89_RS14525BVC89_RS14555BVC89_RS14560BVC89_RS14565BVC89_RS14570BVC89_RS14575
Location: 3473619..3473876 (258 bp)
Type: Others
Protein ID: WP_158657947.1
Location: 3473984..3474331 (348 bp)
Type: Others
Protein ID: WP_086934625.1
Location: 3474328..3475608 (1281 bp)
Type: Others
Protein ID: WP_086931886.1
Location: 3475683..3475919 (237 bp)
Type: Antitoxin
Protein ID: WP_086931887.1
Location: 3475922..3476212 (291 bp)
Type: Toxin
Protein ID: WP_086931888.1
Location: 3471831..3473279 (1449 bp)
Type: Others
Protein ID: WP_086931884.1
Location: 3476227..3476598 (372 bp)
Type: Others
Protein ID: WP_086931889.1
Location: 3476601..3477209 (609 bp)
Type: Others
Protein ID: WP_086931890.1
Location: 3477743..3477991 (249 bp)
Type: Others
Protein ID: WP_158657948.1
Location: 3478019..3480025 (2007 bp)
Type: Others
Protein ID: WP_086931892.1
Location: 3479992..3480900 (909 bp)
Type: Others
Protein ID: WP_086931893.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
BVC89_RS145253471831..3473279-1449WP_086931884.1hypothetical protein-
BVC89_RS145303473619..3473876+258WP_158657947.1hypothetical protein-
BVC89_RS145353473984..3474331+348WP_086934625.1hypothetical protein-
BVC89_RS145403474328..3475608+1281WP_086931886.1hypothetical protein-
BVC89_RS145453475683..3475919+237WP_086931887.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
BVC89_RS145503475922..3476212+291WP_086931888.1type II toxin-antitoxin system RelE/ParE family toxinToxin
BVC89_RS145553476227..3476598-372WP_086931889.1helix-turn-helix domain-containing protein-
BVC89_RS145603476601..3477209-609WP_086931890.1tyrosine-type recombinase/integrase-
BVC89_RS145653477743..3477991-249WP_158657948.1hypothetical protein-
BVC89_RS145703478019..3480025-2007WP_086931892.1DEAD/DEAH box helicase family protein-
BVC89_RS145753479992..3480900-909WP_086931893.1DUF1837 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Antitoxin ParD

(1-69)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11324.14 Da        Isoelectric Point: 10.3790

>T73826 WP_086931888.1 NZ_CP020038:3475922-3476212 [Agarilytica rhodophyticola]
MPTYILSPQAQNSLKQISHYTRENFGEQQRKSYLKKLHTKMRAAAKEPHKGKDRSDIKAGYFSIKAEKHMIYYRIRGMHI
DIIDVLHQSMEPTLHI

Download         Length: 291 bp

>T73826 NZ_CP020038:3475922-3476212 [Agarilytica rhodophyticola]
ATGCCGACCTATATTCTCTCTCCCCAAGCGCAAAACAGCCTAAAACAAATCAGTCATTACACACGTGAAAATTTTGGTGA
ACAGCAAAGGAAATCATATCTTAAAAAGCTGCATACCAAGATGCGCGCTGCTGCAAAAGAGCCCCACAAAGGCAAAGACC
GAAGCGATATAAAGGCCGGCTATTTCAGTATCAAAGCTGAAAAGCACATGATTTATTACCGCATACGCGGCATGCATATT
GATATTATTGATGTGCTGCACCAGTCTATGGAACCCACGCTGCATATCTAA

Antitoxin


Download         Length: 79 a.a.        Molecular weight: 8498.46 Da        Isoelectric Point: 4.4217

>AT73826 WP_086931887.1 NZ_CP020038:3475683-3475919 [Agarilytica rhodophyticola]
MARNTSVSLGDHFESFVDERVKAGRYASASDAVRAGLRLLEQEEAKLDLLRQTLATGEKQLDQGQGIDGEAFMTDLIG

Download         Length: 237 bp

>AT73826 NZ_CP020038:3475683-3475919 [Agarilytica rhodophyticola]
ATGGCTAGAAATACTAGCGTTTCACTTGGTGATCACTTTGAAAGTTTTGTTGATGAACGTGTCAAAGCTGGTCGCTATGC
GTCTGCAAGCGATGCGGTTCGCGCTGGCTTGAGGCTGCTTGAGCAAGAAGAAGCCAAGCTTGATTTACTGCGCCAAACAC
TGGCAACGGGCGAAAAGCAGCTTGATCAAGGGCAAGGCATAGACGGTGAAGCATTTATGACTGATTTGATTGGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References