Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2565334..2565605 | Replicon | chromosome |
| Accession | NZ_CP020025 | ||
| Organism | Escherichia coli strain WB61 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2565372..2565475 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2565334..2565605 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B1T56_RS13040 | 2562491..2563930 | + | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B1T56_RS13045 | 2564048..2564284 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| B1T56_RS13050 | 2564389..2564580 | + | 192 | WP_001296140.1 | YebW family protein | - |
| B1T56_RS13055 | 2564581..2565237 | - | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| - | 2565334..2565605 | + | 272 | - | - | Antitoxin |
| - | 2565372..2565475 | - | 104 | - | - | Toxin |
| B1T56_RS13060 | 2565633..2565974 | - | 342 | WP_000976472.1 | YebY family protein | - |
| B1T56_RS13065 | 2565987..2566859 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| B1T56_RS13070 | 2566863..2567237 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| B1T56_RS13075 | 2567376..2567606 | + | 231 | WP_077516099.1 | DNA polymerase III subunit theta | - |
| B1T56_RS13080 | 2567708..2568364 | + | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| B1T56_RS13085 | 2568388..2569050 | + | 663 | WP_105178403.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T73804 NZ_CP020025:c2565475-2565372 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT73804 NZ_CP020025:2565334-2565605 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
