Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 1643967..1644460 | Replicon | chromosome |
Accession | NZ_CP020017 | ||
Organism | Tetragenococcus halophilus strain KUD23 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A2H6C3W3 |
Locus tag | B2J85_RS07895 | Protein ID | WP_014123900.1 |
Coordinates | 1643967..1644233 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A2H6CKH8 |
Locus tag | B2J85_RS07900 | Protein ID | WP_014123899.1 |
Coordinates | 1644230..1644460 (-) | Length | 77 a.a. |
Genomic Context
Location: 1640831..1641538 (708 bp)
Type: Others
Protein ID: WP_014123906.1
Type: Others
Protein ID: WP_014123906.1
Location: 1641522..1642442 (921 bp)
Type: Others
Protein ID: WP_014123905.1
Type: Others
Protein ID: WP_014123905.1
Location: 1642769..1643416 (648 bp)
Type: Others
Protein ID: WP_014123904.1
Type: Others
Protein ID: WP_014123904.1
Location: 1643572..1643754 (183 bp)
Type: Others
Protein ID: WP_014123901.1
Type: Others
Protein ID: WP_014123901.1
Location: 1644627..1644863 (237 bp)
Type: Others
Protein ID: WP_014123898.1
Type: Others
Protein ID: WP_014123898.1
Location: 1645074..1646180 (1107 bp)
Type: Others
Protein ID: WP_094243771.1
Type: Others
Protein ID: WP_094243771.1
Location: 1646496..1647698 (1203 bp)
Type: Others
Protein ID: WP_157728020.1
Type: Others
Protein ID: WP_157728020.1
Location: 1640091..1640375 (285 bp)
Type: Others
Protein ID: WP_014123908.1
Type: Others
Protein ID: WP_014123908.1
Location: 1640365..1640610 (246 bp)
Type: Others
Protein ID: WP_014123907.1
Type: Others
Protein ID: WP_014123907.1
Location: 1643967..1644233 (267 bp)
Type: Toxin
Protein ID: WP_014123900.1
Type: Toxin
Protein ID: WP_014123900.1
Location: 1644230..1644460 (231 bp)
Type: Antitoxin
Protein ID: WP_014123899.1
Type: Antitoxin
Protein ID: WP_014123899.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
B2J85_RS07865 | 1640091..1640375 | - | 285 | WP_014123908.1 | type II toxin-antitoxin system YafQ family toxin | - |
B2J85_RS07870 | 1640365..1640610 | - | 246 | WP_014123907.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
B2J85_RS07875 | 1640831..1641538 | + | 708 | WP_014123906.1 | DUF969 domain-containing protein | - |
B2J85_RS07880 | 1641522..1642442 | + | 921 | WP_014123905.1 | DUF979 domain-containing protein | - |
B2J85_RS07885 | 1642769..1643416 | + | 648 | WP_014123904.1 | pyroglutamyl-peptidase I | - |
B2J85_RS07890 | 1643572..1643754 | + | 183 | WP_014123901.1 | putative holin-like toxin | - |
B2J85_RS07895 | 1643967..1644233 | - | 267 | WP_014123900.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
B2J85_RS07900 | 1644230..1644460 | - | 231 | WP_014123899.1 | hypothetical protein | Antitoxin |
B2J85_RS07905 | 1644627..1644863 | + | 237 | WP_014123898.1 | hypothetical protein | - |
B2J85_RS07910 | 1645074..1646180 | + | 1107 | WP_094243771.1 | Ldh family oxidoreductase | - |
B2J85_RS07915 | 1646496..1647698 | + | 1203 | WP_157728020.1 | divalent metal cation transporter | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10597.17 Da Isoelectric Point: 10.0661
>T73761 WP_014123900.1 NZ_CP020017:c1644233-1643967 [Tetragenococcus halophilus]
MSYRLVFTSEIQKQFRKMDKYQATLITRWLYQHIDGIDDPRKFGKELTTNRSGQWRYRIGKYRVIVEIEDSQLVVLAVQV
GHEKNVYN
MSYRLVFTSEIQKQFRKMDKYQATLITRWLYQHIDGIDDPRKFGKELTTNRSGQWRYRIGKYRVIVEIEDSQLVVLAVQV
GHEKNVYN
Download Length: 267 bp
>T73761 NZ_CP020017:c1644233-1643967 [Tetragenococcus halophilus]
ATGAGCTACCGCTTAGTCTTCACTTCTGAAATACAAAAACAATTTAGAAAAATGGATAAATATCAGGCGACTTTAATTAC
TCGTTGGCTGTATCAGCATATTGATGGAATTGACGACCCTCGCAAATTTGGCAAAGAACTAACTACAAATCGGTCTGGTC
AATGGCGTTATAGAATTGGCAAATATCGTGTTATCGTTGAAATAGAAGATAGCCAATTGGTTGTACTAGCTGTTCAAGTT
GGTCATGAAAAAAATGTTTATAATTGA
ATGAGCTACCGCTTAGTCTTCACTTCTGAAATACAAAAACAATTTAGAAAAATGGATAAATATCAGGCGACTTTAATTAC
TCGTTGGCTGTATCAGCATATTGATGGAATTGACGACCCTCGCAAATTTGGCAAAGAACTAACTACAAATCGGTCTGGTC
AATGGCGTTATAGAATTGGCAAATATCGTGTTATCGTTGAAATAGAAGATAGCCAATTGGTTGTACTAGCTGTTCAAGTT
GGTCATGAAAAAAATGTTTATAATTGA
Antitoxin
Download Length: 77 a.a. Molecular weight: 8878.94 Da Isoelectric Point: 3.9487
>AT73761 WP_014123899.1 NZ_CP020017:c1644460-1644230 [Tetragenococcus halophilus]
MAMITVRVSDAEKEWLNYMADFYGISLSDLLKTYSMEQLEDEYDRQTAEIAYKHWLENGKQTVSMDEILSEFGGLE
MAMITVRVSDAEKEWLNYMADFYGISLSDLLKTYSMEQLEDEYDRQTAEIAYKHWLENGKQTVSMDEILSEFGGLE
Download Length: 231 bp
>AT73761 NZ_CP020017:c1644460-1644230 [Tetragenococcus halophilus]
ATGGCTATGATTACAGTACGTGTAAGTGACGCGGAAAAAGAATGGTTGAATTATATGGCTGATTTCTACGGAATCTCTTT
GTCTGACCTTTTAAAAACCTATTCGATGGAACAATTAGAAGATGAATATGACCGCCAAACAGCTGAGATTGCATATAAAC
ATTGGCTCGAAAATGGTAAGCAAACAGTATCAATGGATGAAATTCTTTCTGAATTTGGAGGTTTAGAATGA
ATGGCTATGATTACAGTACGTGTAAGTGACGCGGAAAAAGAATGGTTGAATTATATGGCTGATTTCTACGGAATCTCTTT
GTCTGACCTTTTAAAAACCTATTCGATGGAACAATTAGAAGATGAATATGACCGCCAAACAGCTGAGATTGCATATAAAC
ATTGGCTCGAAAATGGTAAGCAAACAGTATCAATGGATGAAATTCTTTCTGAATTTGGAGGTTTAGAATGA
Structures
Toxin
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Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2H6C3W3 |
Antitoxin
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Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2H6CKH8 |