Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 1729680..1730296 Replicon chromosome
Accession NZ_CP019967
Organism Rhodopseudomonas palustris strain YSC3

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag RPYSC3_RS08065 Protein ID WP_107354812.1
Coordinates 1730000..1730296 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag RPYSC3_RS08060 Protein ID WP_107354811.1
Coordinates 1729680..1729997 (-) Length 106 a.a.

Genomic Context

RPYSC3_RS08040RPYSC3_RS08045RPYSC3_RS08055RPYSC3_RS08085RPYSC3_RS08095RPYSC3_RS08035RPYSC3_RS08050RPYSC3_RS08060RPYSC3_RS08065RPYSC3_RS08075RPYSC3_RS08080RPYSC3_RS08090
Location: 1725851..1727395 (1545 bp)
Type: Others
Protein ID: WP_107354807.1
Location: 1727509..1727940 (432 bp)
Type: Others
Protein ID: WP_107354808.1
Location: 1729000..1729236 (237 bp)
Type: Others
Protein ID: WP_107354810.1
Location: 1732962..1733468 (507 bp)
Type: Others
Protein ID: WP_107354814.1
Location: 1734499..1735086 (588 bp)
Type: Others
Protein ID: WP_107354816.1
Location: 1725089..1725670 (582 bp)
Type: Others
Protein ID: WP_107354806.1
Location: 1728109..1728429 (321 bp)
Type: Others
Protein ID: WP_107354809.1
Location: 1729680..1729997 (318 bp)
Type: Antitoxin
Protein ID: WP_107354811.1
Location: 1730000..1730296 (297 bp)
Type: Toxin
Protein ID: WP_107354812.1
Location: 1730740..1732020 (1281 bp)
Type: Others
Protein ID: WP_107354813.1
Location: 1732261..1732854 (594 bp)
Type: Others
Protein ID: WP_107343619.1
Location: 1733478..1734413 (936 bp)
Type: Others
Protein ID: WP_107354815.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
RPYSC3_RS080351725089..1725670-582WP_107354806.1L,D-transpeptidase-
RPYSC3_RS080401725851..1727395+1545WP_107354807.1acetolactate synthase large subunit-
RPYSC3_RS080451727509..1727940+432WP_107354808.1DUF5413 family protein-
RPYSC3_RS080501728109..1728429-321WP_107354809.1hypothetical protein-
RPYSC3_RS080551729000..1729236+237WP_107354810.1hypothetical protein-
RPYSC3_RS080601729680..1729997-318WP_107354811.1putative addiction module antidote proteinAntitoxin
RPYSC3_RS080651730000..1730296-297WP_107354812.1type II toxin-antitoxin system RelE/ParE family toxinToxin
RPYSC3_RS080751730740..1732020-1281WP_107354813.1hypothetical protein-
RPYSC3_RS080801732261..1732854-594WP_107343619.1DUF1134 domain-containing protein-
RPYSC3_RS080851732962..1733468+507WP_107354814.1hypothetical protein-
RPYSC3_RS080901733478..1734413-936WP_107354815.1ketopantoate reductase family protein-
RPYSC3_RS080951734499..1735086+588WP_107354816.1TetR/AcrR family transcriptional regulator C-terminal ligand-binding domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-94)

Antitoxin

Uncharacterized protein HI1420

(8-98)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 10967.53 Da        Isoelectric Point: 8.9596

>T73630 WP_107354812.1 NZ_CP019967:c1730296-1730000 [Rhodopseudomonas palustris]
MIDVRETVDFTNWLAALSDLRARLQIVRRIERIAAGNFGDAKSVGGAVKELRIDYGPGYRVYDTRRGDTVVILLCGGDKR
TQSKDIRKAKEIAEALED

Download         Length: 297 bp

>T73630 NZ_CP019967:c1730296-1730000 [Rhodopseudomonas palustris]
ATGATTGACGTTCGCGAAACAGTGGATTTCACGAACTGGCTCGCCGCCTTGAGCGACCTGCGCGCCCGTCTGCAGATCGT
TCGCCGGATCGAGCGGATTGCCGCGGGAAACTTCGGTGATGCCAAATCGGTTGGTGGCGCGGTGAAGGAGCTTCGGATCG
ACTACGGACCGGGCTACCGAGTTTACGACACGCGGCGCGGCGACACCGTCGTCATCCTGCTCTGCGGCGGCGACAAGCGG
ACGCAAAGCAAGGACATCCGGAAGGCTAAGGAAATTGCAGAGGCGTTGGAGGACTGA

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11410.24 Da        Isoelectric Point: 10.7447

>AT73630 WP_107354811.1 NZ_CP019967:c1729997-1729680 [Rhodopseudomonas palustris]
MKVSKLKKFNAAEHLRTPEARAEYLNIVLADGDPNEVRDALNLVARAQGMSAIAKAAGVTREGLYKTLGENGNPEFATIL
RVFGAMGFRLTAELAKNKPRRKAVA

Download         Length: 318 bp

>AT73630 NZ_CP019967:c1729997-1729680 [Rhodopseudomonas palustris]
ATGAAGGTCAGCAAACTGAAGAAGTTCAACGCGGCCGAACACCTTCGTACACCGGAAGCCCGCGCGGAGTATCTGAACAT
CGTTCTCGCCGACGGCGACCCCAACGAAGTGCGTGACGCACTCAATCTCGTCGCTCGCGCGCAGGGCATGAGCGCGATCG
CCAAGGCCGCTGGCGTCACCAGAGAGGGACTCTACAAGACGCTCGGTGAGAACGGTAACCCCGAGTTCGCAACCATCCTC
CGGGTGTTCGGCGCCATGGGATTCCGGTTGACGGCAGAACTGGCCAAAAACAAGCCGAGAAGGAAAGCAGTGGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References