Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3819093..3819364 | Replicon | chromosome |
| Accession | NZ_CP019961 | ||
| Organism | Escherichia coli strain HKUOPY1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3819223..3819326 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3819093..3819364 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B2J87_RS19435 | 3815648..3816310 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| B2J87_RS19440 | 3816334..3816990 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| B2J87_RS19445 | 3817092..3817322 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B2J87_RS19450 | 3817461..3817835 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| B2J87_RS19455 | 3817839..3818711 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| B2J87_RS19460 | 3818724..3819065 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3819093..3819364 | - | 272 | - | - | Antitoxin |
| - | 3819223..3819326 | + | 104 | - | - | Toxin |
| B2J87_RS19465 | 3819461..3820117 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| B2J87_RS19470 | 3820118..3820309 | - | 192 | WP_001338167.1 | YebW family protein | - |
| B2J87_RS19475 | 3820414..3820650 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| B2J87_RS19480 | 3820768..3822207 | - | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T73614 NZ_CP019961:3819223-3819326 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT73614 NZ_CP019961:c3819364-3819093 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
