Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2184609..2184880 | Replicon | chromosome |
| Accession | NZ_CP019944 | ||
| Organism | Escherichia coli strain DSM 103246 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2184739..2184842 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2184609..2184880 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Eco28_RS11260 | 2181165..2181827 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| Eco28_RS11265 | 2181850..2182506 | - | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein | - |
| Eco28_RS11270 | 2182608..2182838 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| Eco28_RS11275 | 2182977..2183351 | + | 375 | WP_021577594.1 | CopC domain-containing protein YobA | - |
| Eco28_RS11280 | 2183355..2184227 | + | 873 | WP_080030105.1 | copper homeostasis membrane protein CopD | - |
| Eco28_RS11285 | 2184240..2184581 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2184609..2184880 | - | 272 | - | - | Antitoxin |
| - | 2184739..2184842 | + | 104 | - | - | Toxin |
| Eco28_RS11290 | 2184977..2185633 | + | 657 | WP_000812738.1 | protein-serine/threonine phosphatase | - |
| Eco28_RS11295 | 2185634..2185825 | - | 192 | WP_001296140.1 | YebW family protein | - |
| Eco28_RS11300 | 2185930..2186166 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| Eco28_RS11305 | 2186283..2187722 | - | 1440 | WP_080030451.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T73520 NZ_CP019944:2184739-2184842 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT73520 NZ_CP019944:c2184880-2184609 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
