Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2221065..2221274 | Replicon | chromosome |
| Accession | NZ_CP019889 | ||
| Organism | Enterobacter hormaechei strain FRM | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2221158..2221261 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2221065..2221274 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B1023_RS11165 | 2217607..2218269 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| B1023_RS11170 | 2218294..2218940 | - | 647 | Protein_2117 | carbon-nitrogen hydrolase family protein | - |
| B1023_RS11175 | 2219052..2219282 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| B1023_RS11180 | 2219420..2219791 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| B1023_RS11185 | 2219793..2220662 | + | 870 | WP_045348670.1 | copper homeostasis membrane protein CopD | - |
| B1023_RS11190 | 2220679..2221017 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2221065..2221274 | - | 210 | - | - | Antitoxin |
| B1023_RS11195 | 2221142..2221339 | - | 198 | WP_045338990.1 | hypothetical protein | - |
| - | 2221158..2221261 | + | 104 | - | - | Toxin |
| B1023_RS11200 | 2221385..2222365 | - | 981 | WP_039270562.1 | VirK/YbjX family protein | - |
| B1023_RS11205 | 2222533..2223177 | + | 645 | WP_045348668.1 | protein-serine/threonine phosphatase | - |
| B1023_RS11210 | 2223212..2223451 | - | 240 | WP_003859885.1 | YebV family protein | - |
| B1023_RS11215 | 2223558..2225006 | - | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2156825..2227711 | 70886 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T73422 NZ_CP019889:2221158-2221261 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT73422 NZ_CP019889:c2221274-2221065 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
