Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2174352..2174623 | Replicon | chromosome |
| Accession | NZ_CP019778 | ||
| Organism | Escherichia coli strain NCTC86 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2174390..2174493 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2174352..2174623 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B0915_RS11295 | 2171509..2172948 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B0915_RS11300 | 2173066..2173302 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| B0915_RS11305 | 2173407..2173598 | + | 192 | WP_000457842.1 | YebW family protein | - |
| B0915_RS11310 | 2173599..2174255 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2174352..2174623 | + | 272 | - | - | Antitoxin |
| - | 2174390..2174493 | - | 104 | - | - | Toxin |
| B0915_RS11315 | 2174651..2174992 | - | 342 | WP_000976476.1 | YebY family protein | - |
| B0915_RS11320 | 2175005..2175878 | - | 874 | Protein_2076 | copper homeostasis membrane protein CopD | - |
| B0915_RS11325 | 2175882..2176256 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| B0915_RS11330 | 2176395..2176625 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B0915_RS11335 | 2176727..2177383 | + | 657 | WP_066009212.1 | carbon-nitrogen hydrolase family protein | - |
| B0915_RS11340 | 2177407..2178069 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T73276 NZ_CP019778:c2174493-2174390 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT73276 NZ_CP019778:2174352-2174623 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
