Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2174352..2174623 Replicon chromosome
Accession NZ_CP019778
Organism Escherichia coli strain NCTC86

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2174390..2174493 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2174352..2174623 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B0915_RS11295 2171509..2172948 + 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
B0915_RS11300 2173066..2173302 + 237 WP_001295499.1 DUF1480 family protein -
B0915_RS11305 2173407..2173598 + 192 WP_000457842.1 YebW family protein -
B0915_RS11310 2173599..2174255 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 2174352..2174623 + 272 - - Antitoxin
- 2174390..2174493 - 104 - - Toxin
B0915_RS11315 2174651..2174992 - 342 WP_000976476.1 YebY family protein -
B0915_RS11320 2175005..2175878 - 874 Protein_2076 copper homeostasis membrane protein CopD -
B0915_RS11325 2175882..2176256 - 375 WP_000168747.1 CopC domain-containing protein YobA -
B0915_RS11330 2176395..2176625 + 231 WP_000916763.1 DNA polymerase III subunit theta -
B0915_RS11335 2176727..2177383 + 657 WP_066009212.1 carbon-nitrogen hydrolase family protein -
B0915_RS11340 2177407..2178069 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T73276 NZ_CP019778:c2174493-2174390 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT73276 NZ_CP019778:2174352-2174623 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References