Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 6232720..6233239 Replicon chromosome
Accession NZ_CP019732
Organism Pseudomonas syringae pv. actinidiae strain CRAFRU 14.08

Toxin (Protein)


Gene name relE Uniprot ID S6W9N2
Locus tag B1F85_RS29790 Protein ID WP_017684310.1
Coordinates 6232720..6233010 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID S6UWW5
Locus tag B1F85_RS29795 Protein ID WP_002551444.1
Coordinates 6233000..6233239 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B1F85_RS29755 6229050..6229592 + 543 WP_017684306.1 hypothetical protein -
B1F85_RS29760 6229656..6229939 - 284 Protein_5485 type II toxin-antitoxin system RelE/ParE family toxin -
B1F85_RS29765 6229929..6230171 - 243 WP_017684307.1 hypothetical protein -
B1F85_RS29770 6230352..6230966 - 615 WP_017684308.1 histidine phosphatase family protein -
B1F85_RS29775 6231059..6231400 - 342 WP_003380754.1 hypothetical protein -
B1F85_RS29780 6231757..6232494 + 738 WP_017684309.1 hypothetical protein -
B1F85_RS29790 6232720..6233010 - 291 WP_017684310.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
B1F85_RS29795 6233000..6233239 - 240 WP_002551444.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
B1F85_RS29800 6233415..6233876 - 462 WP_017684311.1 GNAT family N-acetyltransferase -
B1F85_RS29805 6233963..6234532 - 570 WP_017684312.1 GNAT family N-acetyltransferase -
B1F85_RS29810 6234693..6235187 + 495 WP_005621707.1 hypothetical protein -
B1F85_RS29815 6235460..6235807 + 348 WP_017684314.1 helix-turn-helix domain-containing protein -
B1F85_RS29820 6235893..6237167 - 1275 WP_003380766.1 OprD family porin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-81)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-64)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11145.98 Da        Isoelectric Point: 10.0984

>T73236 WP_017684310.1 NZ_CP019732:c6233010-6232720 [Pseudomonas syringae pv. actinidiae]
MTYSLEFDARALKEWHKLGDTVRQQLKKKLATILVAPRVEANRLHALPDCYKIKLRSSGYRLVYQVIDQEVVVFVVAVDK
RERDEVYRKAADRLGG

Download         Length: 291 bp

>T73236 NZ_CP019732:c6233010-6232720 [Pseudomonas syringae pv. actinidiae]
ATGACTTATAGCCTCGAATTTGATGCGCGAGCTCTGAAGGAATGGCACAAATTAGGCGATACCGTGCGTCAGCAGCTCAA
GAAAAAGCTGGCTACGATTCTGGTTGCTCCGCGTGTTGAAGCAAATCGCCTGCATGCGTTGCCCGACTGCTACAAAATCA
AGCTGCGCAGCAGCGGCTATCGGCTGGTTTATCAGGTTATTGACCAAGAGGTTGTGGTCTTCGTGGTTGCTGTGGACAAG
CGTGAGCGAGATGAGGTTTACCGTAAGGCGGCTGATCGGTTGGGTGGGTAA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8955.34 Da        Isoelectric Point: 4.6017

>AT73236 WP_002551444.1 NZ_CP019732:c6233239-6233000 [Pseudomonas syringae pv. actinidiae]
MASINVRIDDDLKARAYLELEKLGVTPSELLRQTLQYVAERGQLPFKTVLMTEEDEALLATVRERLAAPQRVKVSLDDL

Download         Length: 240 bp

>AT73236 NZ_CP019732:c6233239-6233000 [Pseudomonas syringae pv. actinidiae]
ATGGCGTCTATTAATGTTCGTATCGACGACGATCTCAAGGCTCGTGCTTATCTCGAGCTTGAAAAGCTTGGCGTCACCCC
TTCGGAACTGCTGCGCCAAACCCTGCAGTACGTGGCAGAGCGCGGCCAGTTGCCGTTCAAGACCGTACTGATGACCGAGG
AAGACGAAGCCTTGCTTGCAACAGTGCGCGAGCGCCTTGCGGCTCCGCAACGGGTCAAGGTTTCACTGGATGACTTATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0K8M1I3

Antitoxin

Source ID Structure
AlphaFold DB A0A0K8M1G9

References