Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 4737108..4737633 Replicon chromosome
Accession NZ_CP019730
Organism Pseudomonas syringae pv. actinidiae strain CRAFRU 12.29

Toxin (Protein)


Gene name relE Uniprot ID A0A0K8M609
Locus tag B1R35_RS22665 Protein ID WP_017684329.1
Coordinates 4737343..4737633 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A0K8M645
Locus tag B1R35_RS22660 Protein ID WP_017684328.1
Coordinates 4737108..4737353 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B1R35_RS22655 4733024..4736935 - 3912 WP_020365655.1 ATP-dependent RNA helicase HrpA -
B1R35_RS22660 4737108..4737353 + 246 WP_017684328.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
B1R35_RS22665 4737343..4737633 + 291 WP_017684329.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
B1R35_RS22670 4737760..4739451 - 1692 WP_003382607.1 long-chain-fatty-acid--CoA ligase FadD1 -
B1R35_RS22675 4739807..4741495 - 1689 WP_017684330.1 long-chain-fatty-acid--CoA ligase FadD2 -
B1R35_RS22685 4741891..4742361 + 471 WP_003382605.1 MaoC family dehydratase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11019.86 Da        Isoelectric Point: 10.4180

>T73225 WP_017684329.1 NZ_CP019730:4737343-4737633 [Pseudomonas syringae pv. actinidiae]
MTFKLEFLPSALKEWKKLGHTVSAQLKKKLLERLELPRNAGDALHGMPDHYKIKLRSAGYRLVYRVEDDRVVVTVVAVGK
RERGDIYDSAKDRLSP

Download         Length: 291 bp

>T73225 NZ_CP019730:4737343-4737633 [Pseudomonas syringae pv. actinidiae]
TTGACCTTTAAGCTCGAGTTTCTGCCTTCAGCCCTGAAAGAGTGGAAAAAACTGGGGCATACCGTTAGTGCTCAACTCAA
GAAAAAGCTTTTGGAGCGGCTCGAATTACCTCGAAATGCGGGCGATGCGCTGCATGGCATGCCCGATCACTACAAAATCA
AGTTGCGCAGTGCTGGTTACAGACTGGTTTACCGGGTGGAAGATGATCGGGTAGTAGTGACCGTCGTCGCTGTAGGCAAG
CGCGAACGAGGCGATATCTACGATTCAGCCAAGGACAGGCTGTCTCCCTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8860.38 Da        Isoelectric Point: 4.9721

>AT73225 WP_017684328.1 NZ_CP019730:4737108-4737353 [Pseudomonas syringae pv. actinidiae]
MQNIFADIAVSVSELKKNPSAVLSGAQGLPVAVLNHNKVMGYMVPAEVFEAMMKRLDDLDLADLIKARQHEKPVSVDILD
L

Download         Length: 246 bp

>AT73225 NZ_CP019730:4737108-4737353 [Pseudomonas syringae pv. actinidiae]
ATGCAAAATATCTTTGCGGACATCGCGGTCAGCGTCTCTGAACTGAAGAAAAACCCGTCAGCCGTCCTGAGCGGCGCACA
AGGCTTGCCCGTCGCAGTACTCAATCACAATAAAGTCATGGGCTACATGGTGCCTGCCGAGGTGTTTGAAGCAATGATGA
AGCGCCTTGATGACCTCGATCTGGCCGACCTGATCAAAGCCAGGCAACATGAAAAGCCGGTATCGGTAGATATACTTGAC
CTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0K8M609

Antitoxin

Source ID Structure
AlphaFold DB A0A0K8M645

References