Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3410686..3410789 | Replicon | chromosome |
| Accession | NZ_CP019706 | ||
| Organism | Pantoea alhagi strain LTYR-11Z | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3410686..3410787 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3410686..3410789 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B1H58_RS16055 | 3405779..3407842 | + | 2064 | WP_085071472.1 | prolyl oligopeptidase family serine peptidase | - |
| B1H58_RS16060 | 3407839..3408507 | - | 669 | WP_085071473.1 | exodeoxyribonuclease X | - |
| B1H58_RS16065 | 3408535..3408762 | - | 228 | WP_085071474.1 | DNA polymerase III subunit theta | - |
| B1H58_RS16070 | 3408891..3409268 | + | 378 | WP_085071475.1 | CopC domain-containing protein YobA | - |
| B1H58_RS16075 | 3409271..3410146 | + | 876 | WP_085071476.1 | copper homeostasis membrane protein CopD | - |
| B1H58_RS16080 | 3410180..3410521 | + | 342 | WP_085071477.1 | YebY family protein | - |
| - | 3410686..3410787 | + | 102 | - | - | Toxin |
| - | 3410686..3410789 | - | 104 | - | - | Antitoxin |
| B1H58_RS16085 | 3411075..3411412 | - | 338 | Protein_3097 | hypothetical protein | - |
| B1H58_RS16090 | 3411513..3412048 | - | 536 | Protein_3098 | hypothetical protein | - |
| B1H58_RS16095 | 3412357..3412587 | - | 231 | Protein_3099 | DinI-like family protein | - |
| B1H58_RS20845 | 3412591..3412713 | - | 123 | Protein_3100 | hypothetical protein | - |
| B1H58_RS16100 | 3412941..3413153 | - | 213 | WP_157130196.1 | hypothetical protein | - |
| B1H58_RS16110 | 3413445..3414086 | - | 642 | WP_085072343.1 | hypothetical protein | - |
| B1H58_RS16115 | 3414099..3414827 | - | 729 | WP_085071480.1 | LexA family transcriptional regulator | - |
| B1H58_RS16120 | 3414934..3415122 | + | 189 | WP_085071481.1 | Cro/Cl family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3400626..3431250 | 30624 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 bp
>T73207 NZ_CP019706:3410686-3410787 [Pantoea alhagi]
GGCAAGGCGACATCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTTACAAGAGCCATTTCCCTGGACCGAATATAG
GAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACATCGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTTACAAGAGCCATTTCCCTGGACCGAATATAG
GAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 104 bp
>AT73207 NZ_CP019706:c3410789-3410686 [Pantoea alhagi]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGTAAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCGATGTCGCCTTGCC
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGTAAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCGATGTCGCCTTGCC
