Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) KacT-ataR/DUF1778(antitoxin)
Location 565266..566060 Replicon chromosome
Accession NZ_CP019706
Organism Pantoea alhagi strain LTYR-11Z

Toxin (Protein)


Gene name KacT Uniprot ID -
Locus tag B1H58_RS02650 Protein ID WP_085067850.1
Coordinates 565266..565784 (-) Length 173 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID -
Locus tag B1H58_RS02655 Protein ID WP_085067851.1
Coordinates 565788..566060 (-) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B1H58_RS02635 560698..561465 - 768 WP_085067847.1 class II glutamine amidotransferase -
B1H58_RS02640 561622..562203 - 582 WP_085067848.1 D-sedoheptulose 7-phosphate isomerase -
B1H58_RS02645 562537..564984 + 2448 WP_085067849.1 acyl-CoA dehydrogenase FadE -
B1H58_RS02650 565266..565784 - 519 WP_085067850.1 GNAT family N-acetyltransferase Toxin
B1H58_RS02655 565788..566060 - 273 WP_085067851.1 DUF1778 domain-containing protein Antitoxin
B1H58_RS02660 566489..568003 - 1515 WP_208615333.1 TrkH family potassium uptake protein -
B1H58_RS02665 568289..569780 + 1492 Protein_516 diguanylate cyclase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Vibrio phage ICP1, Orf50

(5-89)


Sequences

Toxin        


Download         Length: 173 a.a.        Molecular weight: 19628.37 Da        Isoelectric Point: 8.9022

>T73203 WP_085067850.1 NZ_CP019706:c565784-565266 [Pantoea alhagi]
METLNVELFTDENRYKISHFDCGKATLNKFLIEHLRRQHNGKVLRAYVLKNHEADPKILGYYTLSGGSFERSTLPSRTQQ
KKIPYKNVPCVTLGRLAVDKTLQGQGWRSTLVSHAMSVVYNASLAVGIHGMFVDALDDEAKQFYTSFGFIELTDENSRSL
FYPTQSIEKLFQ

Download         Length: 519 bp

>T73203 NZ_CP019706:c565784-565266 [Pantoea alhagi]
TTGGAAACTTTAAACGTTGAACTTTTTACGGATGAAAACCGTTACAAAATTAGCCATTTTGATTGCGGCAAAGCAACTTT
AAATAAATTTCTGATCGAGCATCTTAGACGACAACATAACGGGAAAGTATTAAGAGCTTATGTTCTAAAAAATCACGAGG
CGGATCCAAAAATATTAGGCTATTACACGTTATCCGGCGGTAGCTTTGAAAGATCCACCTTGCCATCCAGAACCCAACAG
AAAAAGATCCCATATAAAAATGTGCCATGCGTTACCCTTGGCAGGCTGGCGGTAGATAAAACTCTGCAGGGGCAAGGCTG
GAGAAGCACTCTGGTTTCGCATGCGATGAGCGTTGTTTATAACGCATCACTGGCAGTTGGTATACATGGCATGTTTGTCG
ATGCTCTGGATGATGAGGCTAAACAATTTTATACGAGCTTCGGTTTTATTGAATTGACGGATGAAAACAGCCGCTCGTTA
TTTTATCCAACACAATCCATTGAAAAACTATTTCAATGA

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10157.63 Da        Isoelectric Point: 7.0144

>AT73203 WP_085067851.1 NZ_CP019706:c566060-565788 [Pantoea alhagi]
MANTLKKQRIDLRLSPEDKTLIENAASLSNLTISQFMLASASERAAEIIEQHQRIVLNEASWKQVMDAISNPPAPNEKLK
RAAQRLQDME

Download         Length: 273 bp

>AT73203 NZ_CP019706:c566060-565788 [Pantoea alhagi]
ATGGCAAACACATTAAAGAAACAACGCATCGATCTGCGTTTATCTCCAGAAGATAAAACGCTTATCGAAAACGCGGCCTC
TCTCAGCAATCTAACTATCTCGCAATTTATGCTTGCAAGTGCTTCTGAACGGGCAGCTGAAATCATTGAACAGCATCAAC
GTATAGTGCTTAACGAAGCGTCCTGGAAACAGGTCATGGATGCCATCAGTAATCCACCAGCACCGAATGAAAAGTTAAAA
CGAGCGGCTCAGCGTCTACAGGATATGGAATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References