Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 321245..321727 Replicon plasmid unnamed1
Accession NZ_CP019641
Organism Planococcus sp. Y42

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag B0X71_RS20170 Protein ID WP_077591339.1
Coordinates 321464..321727 (+) Length 88 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag B0X71_RS20165 Protein ID WP_077591338.1
Coordinates 321245..321457 (+) Length 71 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B0X71_RS20145 316513..316980 + 468 Protein_305 transposase family protein -
B0X71_RS20150 317018..318070 + 1053 Protein_306 transposase -
B0X71_RS20155 318318..318953 + 636 WP_077591336.1 recombinase family protein -
B0X71_RS20160 319197..320555 - 1359 WP_077591337.1 transposase -
B0X71_RS20165 321245..321457 + 213 WP_077591338.1 hypothetical protein Antitoxin
B0X71_RS20170 321464..321727 + 264 WP_077591339.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
B0X71_RS20175 322103..322282 - 180 WP_077591340.1 hypothetical protein -
B0X71_RS20180 322306..323286 - 981 WP_077591341.1 hypothetical protein -
B0X71_RS20185 323319..323603 - 285 WP_077591342.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
B0X71_RS20190 323942..324211 - 270 WP_077591343.1 hypothetical protein -
B0X71_RS20200 324415..324978 - 564 WP_198038766.1 shikimate kinase -
B0X71_RS20205 325291..326415 + 1125 WP_077591345.1 tyrosine-type recombinase/integrase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..329482 329482


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-86)

Antitoxin

Protein of unknown function DUF6290

(1-68)


Sequences

Toxin        


Download         Length: 88 a.a.        Molecular weight: 10157.86 Da        Isoelectric Point: 10.0696

>T73112 WP_077591339.1 NZ_CP019641:321464-321727 [Planococcus sp. Y42]
MYAVRFSDVALKKLKKMDRYQASLLIGWIEKNLQDSSNPRTLGKAVVANHKGKWRYHVGDYRILALIEDEKILITIIDVG
HRKDIYE

Download         Length: 264 bp

>T73112 NZ_CP019641:321464-321727 [Planococcus sp. Y42]
ATGTATGCTGTTCGTTTTTCAGATGTCGCCTTGAAGAAACTGAAAAAGATGGATCGGTACCAAGCTTCGCTCCTGATTGG
CTGGATTGAAAAAAACTTGCAGGATTCCAGCAATCCCCGAACACTTGGAAAAGCAGTGGTTGCGAACCACAAGGGCAAGT
GGCGTTACCATGTCGGTGACTACCGCATCCTGGCTTTAATCGAAGATGAAAAAATCCTTATTACCATAATCGACGTCGGA
CATCGAAAAGATATCTACGAATAA

Antitoxin


Download         Length: 71 a.a.        Molecular weight: 8041.20 Da        Isoelectric Point: 5.8487

>AT73112 WP_077591338.1 NZ_CP019641:321245-321457 [Planococcus sp. Y42]
MATISLRVDDRDSKLIRDYAKMKKTSVSDLMRNATIEKIEDEIDVENFDRVLASTKKTHSLDDVKKELGL

Download         Length: 213 bp

>AT73112 NZ_CP019641:321245-321457 [Planococcus sp. Y42]
ATGGCCACTATTTCCTTGCGTGTGGATGATCGCGACAGCAAACTCATCCGCGATTACGCCAAAATGAAGAAGACGTCCGT
TTCCGATTTGATGCGAAACGCCACCATTGAAAAAATCGAAGATGAGATTGATGTGGAAAATTTTGACCGCGTGCTTGCCA
GTACGAAAAAAACCCATTCCTTGGATGACGTCAAAAAAGAATTGGGTTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References