Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 4078859..4079403 | Replicon | chromosome |
| Accession | NZ_CP019613 | ||
| Organism | Mycobacterium tuberculosis strain H112 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | G0TLU9 |
| Locus tag | B0W98_RS19875 | Protein ID | WP_003409896.1 |
| Coordinates | 4078859..4079155 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | P67299 |
| Locus tag | B0W98_RS19880 | Protein ID | WP_003409899.1 |
| Coordinates | 4079152..4079403 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B0W98_RS19820 | 4073892..4074242 | - | 351 | WP_003409871.1 | hypothetical protein | - |
| B0W98_RS19825 | 4074253..4075155 | - | 903 | WP_003899097.1 | hypothetical protein | - |
| B0W98_RS19830 | 4075176..4075367 | - | 192 | WP_003409876.1 | hypothetical protein | - |
| B0W98_RS19835 | 4075368..4075664 | - | 297 | WP_003409877.1 | hypothetical protein | - |
| B0W98_RS19840 | 4075904..4076119 | + | 216 | WP_003409878.1 | antitoxin | - |
| B0W98_RS19845 | 4076116..4076427 | + | 312 | WP_003409881.1 | type II toxin-antitoxin system VapC family toxin | - |
| B0W98_RS21635 | 4076401..4076922 | - | 522 | WP_003904745.1 | hypothetical protein | - |
| B0W98_RS19855 | 4076897..4077274 | + | 378 | WP_162470919.1 | type II toxin-antitoxin system toxin HigB | - |
| B0W98_RS19860 | 4077316..4077765 | + | 450 | WP_003409886.1 | type II toxin-antitoxin system antitoxin HigA | - |
| B0W98_RS19865 | 4077762..4078307 | + | 546 | WP_003409891.1 | SecB-like chaperone | - |
| B0W98_RS19870 | 4078196..4078810 | - | 615 | WP_003901296.1 | hypothetical protein | - |
| B0W98_RS19875 | 4078859..4079155 | - | 297 | WP_003409896.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| B0W98_RS19880 | 4079152..4079403 | - | 252 | WP_003409899.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| B0W98_RS19885 | 4079390..4079884 | + | 495 | WP_003899099.1 | hypothetical protein | - |
| B0W98_RS19890 | 4080044..4080451 | - | 408 | WP_024754015.1 | type II toxin-antitoxin system VapC family toxin | - |
| B0W98_RS19895 | 4080455..4080727 | - | 273 | WP_003899100.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| B0W98_RS19900 | 4080760..4081980 | - | 1221 | WP_003409919.1 | TetR family transcriptional regulator Mce3R | - |
| B0W98_RS19915 | 4082879..4083676 | + | 798 | WP_003899101.1 | ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11268.64 Da Isoelectric Point: 6.8604
>T73048 WP_003409896.1 NZ_CP019613:c4079155-4078859 [Mycobacterium tuberculosis]
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
VSSRYLLSPAAQAHLEEIWDCTYDRWGVDQAEQYLRELQHAIDRAAANPRIGRACDEIRPGYRKLSAGSHTLFYRVTGEG
TIDVVRVLHQRMDVDRNL
Download Length: 297 bp
>T73048 NZ_CP019613:c4079155-4078859 [Mycobacterium tuberculosis]
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
GTGAGTAGCCGATACCTTCTCTCGCCTGCCGCGCAGGCACATCTGGAAGAGATCTGGGACTGCACCTATGACCGTTGGGG
TGTCGATCAGGCCGAGCAGTACCTGCGCGAACTTCAACACGCTATCGACCGTGCTGCGGCAAACCCGCGGATCGGACGAG
CGTGCGACGAGATTCGCCCCGGCTATCGCAAGCTCTCGGCCGGGTCACACACGTTGTTCTATCGGGTGACTGGCGAAGGC
ACCATCGACGTCGTGCGAGTCCTGCACCAACGGATGGACGTCGACCGGAACCTCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9207.17 Da Isoelectric Point: 7.0150
>AT73048 WP_003409899.1 NZ_CP019613:c4079403-4079152 [Mycobacterium tuberculosis]
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
VGKNTSFVLDEHYSAFIDGEIAAGRYRSASEVIRSALRLLEDRETQLRALREALEAGERSGSSTPFDFDGFLGRKRADAS
RGR
Download Length: 252 bp
>AT73048 NZ_CP019613:c4079403-4079152 [Mycobacterium tuberculosis]
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
GTGGGTAAGAACACGTCCTTCGTCCTCGACGAGCACTACAGCGCCTTCATCGACGGCGAGATCGCCGCGGGCCGCTACCG
GTCGGCCAGTGAAGTCATCCGCTCCGCGTTGCGACTGCTCGAGGACCGTGAAACCCAGCTGCGCGCGCTTCGTGAGGCTC
TCGAGGCCGGCGAACGCAGCGGCAGCTCGACACCGTTCGACTTCGACGGATTCCTCGGTCGTAAGCGGGCTGACGCCTCG
CGTGGCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | G0TLU9 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A7U4BUZ2 |