Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/-
Location 2945239..2945870 Replicon chromosome
Accession NZ_CP019560
Organism Escherichia coli strain KSC1031

Toxin (Protein)


Gene name hicA Uniprot ID U9Y2A7
Locus tag BZY78_RS15260 Protein ID WP_001259385.1
Coordinates 2945595..2945870 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID Q31VE4
Locus tag BZY78_RS15255 Protein ID WP_000593554.1
Coordinates 2945239..2945598 (-) Length 120 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BZY78_RS15225 2940351..2940824 + 474 WP_001161553.1 PTS sugar transporter subunit IIA -
BZY78_RS15230 2940821..2941102 + 282 WP_000084022.1 PTS sugar transporter subunit IIB -
BZY78_RS15235 2941179..2942537 + 1359 WP_001298729.1 PTS galactitol transporter subunit IIC -
BZY78_RS15240 2942530..2944038 + 1509 WP_001298718.1 carbohydrate kinase -
BZY78_RS15245 2944028..2944297 + 270 WP_000933060.1 HPr family phosphocarrier protein -
BZY78_RS15250 2944329..2945189 + 861 WP_001131783.1 class II aldolase -
BZY78_RS15255 2945239..2945598 - 360 WP_000593554.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
BZY78_RS15260 2945595..2945870 - 276 WP_001259385.1 type II toxin-antitoxin system HicA family toxin Toxin
BZY78_RS15265 2945943..2947067 - 1125 WP_001216257.1 ABC transporter permease -
BZY78_RS15270 2947067..2949802 - 2736 WP_057696438.1 ribosome-associated ATPase/putative transporter RbbA -
BZY78_RS15275 2949799..2950866 - 1068 WP_000361467.1 HlyD family secretion protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(30-80)

Antitoxin

Uncharacterised protein family HicB

(60-112)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10199.94 Da        Isoelectric Point: 10.7076

>T72648 WP_001259385.1 NZ_CP019560:c2945870-2945595 [Escherichia coli]
MRTKVQALRKKQKNTLDQIFKTPVPQGIKWSDIESLVKALGGEIKEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESV
RDWLLSIGVKP

Download         Length: 276 bp

>T72648 NZ_CP019560:c2945870-2945595 [Escherichia coli]
ATGAGAACCAAGGTACAGGCTTTACGGAAGAAACAAAAAAATACATTGGATCAAATATTTAAAACTCCTGTTCCTCAAGG
GATCAAGTGGTCTGATATAGAGTCACTGGTTAAAGCATTAGGCGGAGAAATTAAGGAAGGAAGAGGTTCGCGTTGTAAGT
TCATACTAAATATGAGCGTTGCGTGTTTCCATCGGCCTCATCCGTCGCCAGATACCGATAAAGGCGCTGTAGAAAGCGTG
CGTGACTGGTTACTAAGTATAGGGGTAAAACCATGA

Antitoxin


Download         Length: 120 a.a.        Molecular weight: 13359.25 Da        Isoelectric Point: 4.8838

>AT72648 WP_000593554.1 NZ_CP019560:c2945598-2945239 [Escherichia coli]
MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSDSIQGLQKEGELSLLEYLEDCKAAGIEPYARTEKIKT
FTLRYPESLSERLNNAAAQQQVSVNTYIIETLNERLNHL

Download         Length: 360 bp

>AT72648 NZ_CP019560:c2945598-2945239 [Escherichia coli]
ATGATCAAACTGAAGACGCCAAACTCTATGGAGATTGCCGGGCAACCTGCAGTTATCACTTACGTGCCAGAACTGAATGC
ATTTCGTGGCAAATTCCTGGGCTTGTCAGGTTATTGTGATTTTGTCTCTGACAGCATTCAGGGGCTGCAAAAAGAAGGGG
AACTTTCCCTGCTAGAGTATCTTGAGGATTGTAAAGCTGCGGGTATTGAGCCGTATGCGCGTACAGAAAAGATTAAGACC
TTTACGTTACGCTATCCAGAATCGCTGAGTGAACGCCTTAATAATGCGGCTGCGCAGCAACAAGTCTCTGTTAATACCTA
TATTATTGAAACACTGAATGAGCGTTTGAATCATTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A4P7TTW8

Antitoxin

Source ID Structure
AlphaFold DB A0A6H2GM94

References