Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1207526..1207797 | Replicon | chromosome |
| Accession | NZ_CP019560 | ||
| Organism | Escherichia coli strain KSC1031 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1207564..1207667 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1207526..1207797 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BZY78_RS06260 | 1204683..1206122 | + | 1440 | WP_057696507.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BZY78_RS06265 | 1206240..1206476 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BZY78_RS06270 | 1206581..1206772 | + | 192 | WP_001338167.1 | YebW family protein | - |
| BZY78_RS06275 | 1206773..1207429 | - | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| - | 1207526..1207797 | + | 272 | - | - | Antitoxin |
| - | 1207564..1207667 | - | 104 | - | - | Toxin |
| BZY78_RS06280 | 1207825..1208166 | - | 342 | WP_000976492.1 | YebY family protein | - |
| BZY78_RS06285 | 1208179..1209051 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| BZY78_RS06290 | 1209055..1209429 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BZY78_RS06295 | 1209568..1209798 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BZY78_RS06300 | 1209900..1210556 | + | 657 | WP_000011659.1 | carbon-nitrogen hydrolase family protein | - |
| BZY78_RS06305 | 1210580..1211242 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T72635 NZ_CP019560:c1207667-1207564 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72635 NZ_CP019560:1207526-1207797 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
