Detailed information of TA system TA072561

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VagC
• Location: 3101124..3101755
• Replicon: chromosome
• Accession: NZ_CP019488
• Organism: Sinorhizobium meliloti strain B399

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: BWO90_RS29345
• Protein ID: WP_010970128.1
• Coordinates: 3101124..3101522 (-)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: Q92MD9
• Locus tag: BWO90_RS29350
• Protein ID: WP_010970129.1
• Coordinates: 3101522..3101755 (-)
• Length: 78 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BWO90_RS29310	3096207..3096509	-	303	WP_010970122.1	type II toxin-antitoxin system RelE/ParE family toxin	-
BWO90_RS29315	3096506..3096781	-	276	WP_010970123.1	type II toxin-antitoxin system ParD family antitoxin	-
BWO90_RS29320	3097066..3097215	+	150	WP_010970124.1	hypothetical protein	-
BWO90_RS29325	3097212..3098147	+	936	WP_010970125.1	site-specific tyrosine recombinase XerD	-
BWO90_RS29330	3098211..3099164	+	954	WP_003527479.1	acetyl-CoA carboxylase carboxyltransferase subunit alpha	-
BWO90_RS29335	3099409..3100851	+	1443	WP_010970126.1	murein L,D-transpeptidase	-
BWO90_RS29340	3100851..3101090	+	240	WP_010970127.1	sulfurtransferase TusA family protein	-
BWO90_RS29345	3101124..3101522	-	399	WP_010970128.1	type II toxin-antitoxin system toxin VapC	Toxin
BWO90_RS29350	3101522..3101755	-	234	WP_010970129.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Antitoxin
BWO90_RS29355	3101864..3103009	-	1146	WP_010970130.1	GTP-binding protein	-
BWO90_RS29360	3103023..3104105	-	1083	WP_010970131.1	D-alanyl-D-alanine carboxypeptidase	-
BWO90_RS29365	3104357..3105520	+	1164	WP_010970132.1	amidohydrolase	-
BWO90_RS29370	3105543..3106007	+	465	WP_010970133.1	Lrp/AsnC ligand binding domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-123)

Antitoxin

• SpoVT-AbrB domain (7-56)

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 14859.16 Da
• Isoelectric Point: 6.6329

>T72561 WP_010970128.1 NZ_CP019488:c3101522-3101124 [Sinorhizobium meliloti]
MLTYMLDTNICIYVMKTYPPAVREKFNGLAEQLCISSITLGELHYGAEKSAWRVENLTAIEHFVARLEVLPFADKAAAHY
GQVRAELERTGTPCGPHDMQIGAHARSEGLIVVTNNIREFVRMPGVRVENWL

Nucleotide

• Length: 399 bp

>T72561 NZ_CP019488:c3101522-3101124 [Sinorhizobium meliloti]
ATGCTCACCTATATGCTCGATACCAATATCTGCATCTATGTGATGAAGACCTATCCGCCGGCCGTGCGCGAAAAGTTCAA
CGGACTGGCGGAGCAGCTTTGCATATCGAGCATCACGCTGGGAGAATTACACTATGGCGCCGAAAAATCGGCCTGGCGCG
TTGAGAACCTTACGGCTATCGAACATTTCGTGGCACGGCTGGAGGTGCTGCCGTTCGCAGACAAGGCAGCGGCCCACTAC
GGGCAGGTTCGGGCTGAACTGGAGCGGACGGGAACGCCATGCGGCCCTCATGACATGCAGATCGGCGCGCATGCGCGCAG
CGAAGGGCTGATTGTCGTGACCAACAATATACGCGAGTTCGTCCGCATGCCGGGTGTAAGGGTCGAGAACTGGCTGTGA

Antitoxin

Protein

• Length: 78 a.a.
• Molecular weight: 8673.87 Da
• Isoelectric Point: 8.9167

>AT72561 WP_010970129.1 NZ_CP019488:c3101755-3101522 [Sinorhizobium meliloti]
MASSTVFISNRSQAVRLPKAVAFPEGVHQVDILKIGRSRVIVPQGKRWDDLFLSGPRVSEDFMSERDQPVAETRESF

Nucleotide

• Length: 234 bp

>AT72561 NZ_CP019488:c3101755-3101522 [Sinorhizobium meliloti]
TTGGCCAGTTCGACCGTATTCATCAGTAACCGTAGCCAGGCGGTGCGGCTGCCAAAGGCCGTCGCCTTTCCCGAGGGCGT
GCATCAGGTCGATATCCTCAAGATCGGCCGCAGCCGCGTGATCGTCCCCCAGGGCAAAAGATGGGACGATCTGTTCCTCA
GCGGGCCGCGCGTCAGCGAGGATTTCATGAGCGAGCGTGATCAGCCGGTGGCGGAAACACGCGAATCCTTCTGA

Structures

Antitoxin

• AlphaFold DB: Q92MD9