Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4525483..4525751 Replicon chromosome
Accession NZ_CP019455
Organism Escherichia coli strain FHI_NMBU_03

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4525521..4525623 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4525483..4525751 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BXO92_RS23055 4522640..4524079 + 1440 WP_024223803.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
BXO92_RS23060 4524197..4524433 + 237 WP_001295499.1 DUF1480 family protein -
BXO92_RS23065 4524538..4524729 + 192 WP_001317886.1 YebW family protein -
BXO92_RS23070 4524730..4525386 - 657 WP_001357783.1 protein-serine/threonine phosphatase -
- 4525483..4525751 + 269 - - Antitoxin
- 4525521..4525623 - 103 - - Toxin
BXO92_RS23075 4525781..4526122 - 342 WP_024223804.1 YebY family protein -
BXO92_RS23080 4526135..4527007 - 873 WP_000879311.1 copper homeostasis membrane protein CopD -
BXO92_RS23085 4527011..4527385 - 375 WP_000168747.1 CopC domain-containing protein YobA -
BXO92_RS23090 4527524..4527754 + 231 WP_000916763.1 DNA polymerase III subunit theta -
BXO92_RS23095 4527856..4528512 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
BXO92_RS23100 4528535..4529197 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T72494 NZ_CP019455:c4525623-4525521 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT72494 NZ_CP019455:4525483-4525751 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCGGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References