Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 2489441..2489906 | Replicon | chromosome |
Accession | NZ_CP019432 | ||
Organism | Pseudomonas sp. S49 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | PspS49_RS11045 | Protein ID | WP_127926662.1 |
Coordinates | 2489441..2489710 (-) | Length | 90 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | PspS49_RS11050 | Protein ID | WP_083368637.1 |
Coordinates | 2489700..2489906 (-) | Length | 69 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PspS49_RS11005 | 2484830..2485303 | + | 474 | WP_160039225.1 | type II secretion system GspH family protein | - |
PspS49_RS11010 | 2485309..2485683 | + | 375 | WP_007919395.1 | type II secretion system GspH family protein | - |
PspS49_RS11015 | 2485658..2486197 | + | 540 | WP_160039227.1 | type II secretion system protein | - |
PspS49_RS11020 | 2486194..2486586 | + | 393 | WP_160039237.1 | curli production assembly/transport protein CsgE | - |
PspS49_RS11025 | 2486583..2487014 | + | 432 | WP_016987875.1 | curli production assembly protein CsgF | - |
PspS49_RS11030 | 2487044..2487904 | + | 861 | WP_038364894.1 | curli production assembly/transporter CsgG | - |
PspS49_RS11035 | 2488825..2489196 | + | 372 | WP_127926661.1 | hypothetical protein | - |
PspS49_RS11045 | 2489441..2489710 | - | 270 | WP_127926662.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
PspS49_RS11050 | 2489700..2489906 | - | 207 | WP_083368637.1 | antitoxin | Antitoxin |
PspS49_RS11055 | 2490208..2491659 | - | 1452 | WP_160039239.1 | curlin | - |
PspS49_RS11060 | 2491687..2492151 | - | 465 | WP_110721043.1 | curlin | - |
PspS49_RS11065 | 2492225..2494453 | - | 2229 | WP_160039241.1 | cadherin-like domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 a.a. Molecular weight: 10249.81 Da Isoelectric Point: 6.8777
>T72447 WP_127926662.1 NZ_CP019432:c2489710-2489441 [Pseudomonas sp. S49]
MQVEWQPEARAELLKILDYISDRNLVAADRLSQAIEGATVTLAQHPHVYRMGRAPGTREMVVHPNYLIIYQVVDRINILS
VLHARQEYP
MQVEWQPEARAELLKILDYISDRNLVAADRLSQAIEGATVTLAQHPHVYRMGRAPGTREMVVHPNYLIIYQVVDRINILS
VLHARQEYP
Download Length: 270 bp
>T72447 NZ_CP019432:c2489710-2489441 [Pseudomonas sp. S49]
ATGCAGGTTGAGTGGCAGCCCGAAGCTCGGGCTGAACTCCTGAAAATCCTTGATTACATCAGTGACAGGAACTTAGTAGC
GGCTGACAGACTTTCCCAAGCTATCGAAGGCGCTACGGTTACCCTTGCTCAACATCCACACGTCTATCGAATGGGTCGAG
CACCCGGTACTCGCGAGATGGTCGTACACCCCAATTACCTGATCATTTATCAGGTGGTGGATCGGATAAATATTCTGAGC
GTTTTGCATGCGCGTCAGGAATATCCATAA
ATGCAGGTTGAGTGGCAGCCCGAAGCTCGGGCTGAACTCCTGAAAATCCTTGATTACATCAGTGACAGGAACTTAGTAGC
GGCTGACAGACTTTCCCAAGCTATCGAAGGCGCTACGGTTACCCTTGCTCAACATCCACACGTCTATCGAATGGGTCGAG
CACCCGGTACTCGCGAGATGGTCGTACACCCCAATTACCTGATCATTTATCAGGTGGTGGATCGGATAAATATTCTGAGC
GTTTTGCATGCGCGTCAGGAATATCCATAA
Antitoxin
Download Length: 69 a.a. Molecular weight: 7609.72 Da Isoelectric Point: 4.2985
>AT72447 WP_083368637.1 NZ_CP019432:c2489906-2489700 [Pseudomonas sp. S49]
MIDPSLIDPLCPVVSDLDPEEQAASYDRWLIAKVQASMSDTRPSIPNDQVMAEMRALMEAKRKKYDAG
MIDPSLIDPLCPVVSDLDPEEQAASYDRWLIAKVQASMSDTRPSIPNDQVMAEMRALMEAKRKKYDAG
Download Length: 207 bp
>AT72447 NZ_CP019432:c2489906-2489700 [Pseudomonas sp. S49]
ATGATCGACCCGTCTTTAATCGACCCACTGTGCCCAGTTGTTTCAGATCTTGACCCCGAAGAGCAGGCCGCCAGCTATGA
CCGTTGGTTAATCGCCAAAGTGCAGGCTTCGATGAGTGATACAAGACCGAGCATTCCAAATGATCAGGTTATGGCTGAGA
TGCGTGCCCTGATGGAAGCAAAGCGTAAAAAATACGATGCAGGTTGA
ATGATCGACCCGTCTTTAATCGACCCACTGTGCCCAGTTGTTTCAGATCTTGACCCCGAAGAGCAGGCCGCCAGCTATGA
CCGTTGGTTAATCGCCAAAGTGCAGGCTTCGATGAGTGATACAAGACCGAGCATTCCAAATGATCAGGTTATGGCTGAGA
TGCGTGCCCTGATGGAAGCAAAGCGTAAAAAATACGATGCAGGTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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