Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2489441..2489906 Replicon chromosome
Accession NZ_CP019432
Organism Pseudomonas sp. S49

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PspS49_RS11045 Protein ID WP_127926662.1
Coordinates 2489441..2489710 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PspS49_RS11050 Protein ID WP_083368637.1
Coordinates 2489700..2489906 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PspS49_RS11005 2484830..2485303 + 474 WP_160039225.1 type II secretion system GspH family protein -
PspS49_RS11010 2485309..2485683 + 375 WP_007919395.1 type II secretion system GspH family protein -
PspS49_RS11015 2485658..2486197 + 540 WP_160039227.1 type II secretion system protein -
PspS49_RS11020 2486194..2486586 + 393 WP_160039237.1 curli production assembly/transport protein CsgE -
PspS49_RS11025 2486583..2487014 + 432 WP_016987875.1 curli production assembly protein CsgF -
PspS49_RS11030 2487044..2487904 + 861 WP_038364894.1 curli production assembly/transporter CsgG -
PspS49_RS11035 2488825..2489196 + 372 WP_127926661.1 hypothetical protein -
PspS49_RS11045 2489441..2489710 - 270 WP_127926662.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PspS49_RS11050 2489700..2489906 - 207 WP_083368637.1 antitoxin Antitoxin
PspS49_RS11055 2490208..2491659 - 1452 WP_160039239.1 curlin -
PspS49_RS11060 2491687..2492151 - 465 WP_110721043.1 curlin -
PspS49_RS11065 2492225..2494453 - 2229 WP_160039241.1 cadherin-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10249.81 Da        Isoelectric Point: 6.8777

>T72447 WP_127926662.1 NZ_CP019432:c2489710-2489441 [Pseudomonas sp. S49]
MQVEWQPEARAELLKILDYISDRNLVAADRLSQAIEGATVTLAQHPHVYRMGRAPGTREMVVHPNYLIIYQVVDRINILS
VLHARQEYP

Download         Length: 270 bp

>T72447 NZ_CP019432:c2489710-2489441 [Pseudomonas sp. S49]
ATGCAGGTTGAGTGGCAGCCCGAAGCTCGGGCTGAACTCCTGAAAATCCTTGATTACATCAGTGACAGGAACTTAGTAGC
GGCTGACAGACTTTCCCAAGCTATCGAAGGCGCTACGGTTACCCTTGCTCAACATCCACACGTCTATCGAATGGGTCGAG
CACCCGGTACTCGCGAGATGGTCGTACACCCCAATTACCTGATCATTTATCAGGTGGTGGATCGGATAAATATTCTGAGC
GTTTTGCATGCGCGTCAGGAATATCCATAA

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7609.72 Da        Isoelectric Point: 4.2985

>AT72447 WP_083368637.1 NZ_CP019432:c2489906-2489700 [Pseudomonas sp. S49]
MIDPSLIDPLCPVVSDLDPEEQAASYDRWLIAKVQASMSDTRPSIPNDQVMAEMRALMEAKRKKYDAG

Download         Length: 207 bp

>AT72447 NZ_CP019432:c2489906-2489700 [Pseudomonas sp. S49]
ATGATCGACCCGTCTTTAATCGACCCACTGTGCCCAGTTGTTTCAGATCTTGACCCCGAAGAGCAGGCCGCCAGCTATGA
CCGTTGGTTAATCGCCAAAGTGCAGGCTTCGATGAGTGATACAAGACCGAGCATTCCAAATGATCAGGTTATGGCTGAGA
TGCGTGCCCTGATGGAAGCAAAGCGTAAAAAATACGATGCAGGTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References