Detailed information of TA system TA072423

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE(toxin)
• Location: 3876581..3877049
• Replicon: chromosome
• Accession: NZ_CP019426
• Organism: Pseudomonas sp. R84

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: PspR84_RS16990
• Protein ID: WP_160060109.1
• Coordinates: 3876765..3877049 (+)
• Length: 95 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: PspR84_RS16985
• Protein ID: WP_160058358.1
• Coordinates: 3876581..3876775 (+)
• Length: 65 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
PspR84_RS16965	3872118..3873086	-	969	WP_160058350.1	Gfo/Idh/MocA family oxidoreductase	-
PspR84_RS16970	3873097..3873984	-	888	WP_160058352.1	Dyp-type peroxidase	-
PspR84_RS16975	3874127..3875167	-	1041	WP_160058354.1	AraC family transcriptional regulator	-
PspR84_RS16980	3875379..3876326	+	948	WP_160058356.1	transporter	-
PspR84_RS16985	3876581..3876775	+	195	WP_160058358.1	stability determinant	Antitoxin
PspR84_RS16990	3876765..3877049	+	285	WP_160060109.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (3-88)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 95 a.a.
• Molecular weight: 10631.05 Da
• Isoelectric Point: 9.8448

>T72423 WP_160060109.1 NZ_CP019426:3876765-3877049 [Pseudomonas sp. R84]
MPLEWSDQALDDLADIIDYIEQHNSNASAALQRKVGAATQRLSSIPFGYRSGRVPGTREMVVNPNYLLVYRVNGRIKILT
LVHTRQQYPRTSST

Nucleotide

• Length: 285 bp

>T72423 NZ_CP019426:3876765-3877049 [Pseudomonas sp. R84]
CTGCCGCTTGAATGGAGCGATCAGGCTCTGGACGATCTGGCTGACATTATCGATTACATTGAACAACACAATTCCAACGC
TTCAGCGGCTTTGCAGCGCAAGGTGGGTGCAGCAACGCAAAGGCTTTCATCAATTCCCTTTGGTTACAGATCCGGTCGAG
TACCAGGCACTCGGGAAATGGTGGTCAATCCAAACTATCTACTGGTCTATCGAGTCAACGGGCGCATCAAAATCCTGACG
TTAGTCCACACCCGACAACAATACCCACGAACGTCATCAACATAA

Antitoxin

Protein

• Length: 65 a.a.
• Molecular weight: 7568.48 Da
• Isoelectric Point: 4.6258

>AT72423 WP_160058358.1 NZ_CP019426:3876581-3876775 [Pseudomonas sp. R84]
MSILLSPFYSEFESEEEAESYDRWFRAKVQAALDDPRPAIPHEEAMVRLDQLLEEKRKNRRTAA

Nucleotide

• Length: 195 bp

>AT72423 NZ_CP019426:3876581-3876775 [Pseudomonas sp. R84]
ATGAGCATATTGCTTTCCCCGTTTTATTCTGAGTTCGAATCCGAAGAAGAGGCAGAGAGCTACGATCGCTGGTTTCGTGC
CAAGGTGCAGGCTGCACTGGATGATCCTCGCCCGGCCATTCCCCATGAGGAAGCCATGGTGCGGCTCGACCAATTATTAG
AAGAGAAACGCAAGAATCGACGCACTGCCGCTTGA