Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3752053..3752324 | Replicon | chromosome |
| Accession | NZ_CP019392 | ||
| Organism | Escherichia coli strain XH992 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3752091..3752193 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3752053..3752324 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BW707_RS17745 | 3749210..3750649 | + | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BW707_RS17750 | 3750767..3751003 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BW707_RS17755 | 3751108..3751299 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BW707_RS17760 | 3751300..3751956 | - | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| - | 3752053..3752324 | + | 272 | - | - | Antitoxin |
| - | 3752091..3752193 | - | 103 | - | - | Toxin |
| BW707_RS17765 | 3752352..3752693 | - | 342 | WP_000976474.1 | YebY family protein | - |
| BW707_RS17770 | 3752706..3753578 | - | 873 | WP_000879322.1 | copper homeostasis membrane protein CopD | - |
| BW707_RS17775 | 3753582..3753956 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| BW707_RS17780 | 3754095..3754325 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BW707_RS17785 | 3754427..3755083 | + | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| BW707_RS17790 | 3755107..3755769 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T72376 NZ_CP019392:c3752193-3752091 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72376 NZ_CP019392:3752053-3752324 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
