Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2017011..2017282 | Replicon | chromosome |
| Accession | NZ_CP019361 | ||
| Organism | Escherichia coli strain XH993 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2017141..2017244 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2017011..2017282 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BW158_RS11570 | 2013567..2014229 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BW158_RS11575 | 2014253..2014909 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| BW158_RS11580 | 2015011..2015241 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BW158_RS11585 | 2015380..2015754 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BW158_RS11590 | 2015758..2016630 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| BW158_RS11595 | 2016643..2016984 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2017011..2017282 | - | 272 | - | - | Antitoxin |
| - | 2017141..2017244 | + | 104 | - | - | Toxin |
| BW158_RS11600 | 2017379..2018035 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| BW158_RS11605 | 2018036..2018227 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BW158_RS11610 | 2018332..2018568 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BW158_RS11615 | 2018686..2020125 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T72335 NZ_CP019361:2017141-2017244 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72335 NZ_CP019361:c2017282-2017011 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
