Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1979076..1979347 | Replicon | chromosome |
| Accession | NZ_CP019355 | ||
| Organism | Escherichia coli strain XH988 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1979206..1979309 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1979076..1979347 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWZ24_RS11410 | 1975631..1976293 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BWZ24_RS11415 | 1976317..1976973 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BWZ24_RS11420 | 1977075..1977305 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWZ24_RS11425 | 1977444..1977818 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| BWZ24_RS11430 | 1977822..1978694 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| BWZ24_RS11435 | 1978707..1979048 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1979076..1979347 | - | 272 | - | - | Antitoxin |
| - | 1979206..1979309 | + | 104 | - | - | Toxin |
| BWZ24_RS11440 | 1979444..1980100 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| BWZ24_RS11445 | 1980101..1980292 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BWZ24_RS11450 | 1980397..1980633 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BWZ24_RS11455 | 1980751..1982190 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T72277 NZ_CP019355:1979206-1979309 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72277 NZ_CP019355:c1979347-1979076 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
