Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-Phd
Location 29108..29667 Replicon chromosome
Accession NZ_CP019304
Organism Arthrobacter sp. QXT-31

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag BWQ92_RS00150 Protein ID WP_083706412.1
Coordinates 29395..29667 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag BWQ92_RS00145 Protein ID WP_076797708.1
Coordinates 29108..29383 (+) Length 92 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BWQ92_RS00125 24780..25160 - 381 Protein_26 IS701 family transposase -
BWQ92_RS00130 25770..26630 - 861 WP_076797705.1 alpha/beta hydrolase -
BWQ92_RS00135 26649..27056 - 408 WP_076797706.1 hypothetical protein -
BWQ92_RS00140 27274..28236 + 963 WP_076797707.1 LysR family transcriptional regulator -
BWQ92_RS00145 29108..29383 + 276 WP_076797708.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
BWQ92_RS00150 29395..29667 + 273 WP_083706412.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BWQ92_RS00155 30028..30678 - 651 WP_083706413.1 TetR/AcrR family transcriptional regulator -
BWQ92_RS00160 31343..32167 + 825 WP_157365252.1 alpha/beta hydrolase -
BWQ92_RS00165 32584..32937 + 354 WP_076797710.1 metalloregulator ArsR/SmtB family transcription factor -
BWQ92_RS00170 32885..33391 + 507 WP_172804229.1 SRPBCC domain-containing protein -
BWQ92_RS00175 33388..34143 + 756 WP_076797712.1 alpha/beta hydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10385.01 Da        Isoelectric Point: 10.1326

>T72231 WP_083706412.1 NZ_CP019304:29395-29667 [Arthrobacter sp. QXT-31]
IQDPWKVEVTSPALKGFRRLPEKAAAAIVEFVTGVLSENPYRLSKPLTNELLGLRTARRGDYRVLFTLDVEAHILYVHRI
EHRSDVYKPR

Download         Length: 273 bp

>T72231 NZ_CP019304:29395-29667 [Arthrobacter sp. QXT-31]
ATCCAAGATCCATGGAAGGTTGAAGTCACCAGCCCGGCACTGAAGGGCTTCCGGCGGCTGCCGGAGAAAGCGGCCGCCGC
CATCGTCGAGTTCGTCACCGGAGTCCTGTCCGAGAACCCGTACCGGTTGAGCAAGCCCTTGACGAACGAACTTCTCGGCC
TGCGCACCGCACGACGCGGTGACTACAGGGTACTGTTCACCCTCGACGTTGAAGCCCACATCCTCTACGTTCACCGCATC
GAACACCGCTCGGACGTCTACAAACCCCGATAG

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 10169.39 Da        Isoelectric Point: 4.8994

>AT72231 WP_076797708.1 NZ_CP019304:29108-29383 [Arthrobacter sp. QXT-31]
MKTVPLSEAKDKLSALVEEADKTHEIIQITRHGHPSAVLMSAEDLESLQETIHWLSQPGIREDLAQARRDIAEGNTTSGE
DLRREFGLPPR

Download         Length: 276 bp

>AT72231 NZ_CP019304:29108-29383 [Arthrobacter sp. QXT-31]
ATGAAGACGGTACCGCTTAGTGAAGCGAAGGACAAGCTTTCCGCGCTCGTGGAGGAAGCGGACAAGACACACGAGATCAT
CCAGATCACCCGACACGGGCACCCCTCAGCGGTCCTGATGTCCGCCGAGGACCTGGAATCCCTGCAGGAAACCATCCATT
GGCTGTCGCAACCGGGCATCCGTGAAGACCTGGCCCAGGCCAGACGCGATATCGCGGAGGGAAACACAACCAGCGGAGAA
GACCTCCGCCGCGAATTCGGGCTCCCGCCGCGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References