Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1985633..1985904 | Replicon | chromosome |
| Accession | NZ_CP019280 | ||
| Organism | Escherichia coli strain 13P484A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1985671..1985774 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1985633..1985904 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI90_RS10515 | 1982790..1984229 | + | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BWI90_RS10520 | 1984347..1984583 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| BWI90_RS10525 | 1984688..1984879 | + | 192 | WP_001338167.1 | YebW family protein | - |
| BWI90_RS10530 | 1984880..1985536 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 1985633..1985904 | + | 272 | - | - | Antitoxin |
| - | 1985671..1985774 | - | 104 | - | - | Toxin |
| BWI90_RS10535 | 1985932..1986273 | - | 342 | WP_000976472.1 | YebY family protein | - |
| BWI90_RS10540 | 1986286..1987158 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| BWI90_RS10545 | 1987162..1987536 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| BWI90_RS10550 | 1987675..1987905 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWI90_RS10555 | 1988007..1988663 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| BWI90_RS10560 | 1988687..1989349 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1980077..2008797 | 28720 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T72192 NZ_CP019280:c1985774-1985671 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72192 NZ_CP019280:1985633-1985904 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
