Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 932147..932415 | Replicon | chromosome |
| Accession | NZ_CP019273 | ||
| Organism | Escherichia coli strain 13P477T | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 932275..932377 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 932147..932415 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI89_RS04740 | 928700..929362 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BWI89_RS04745 | 929386..930042 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| BWI89_RS04750 | 930144..930374 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| BWI89_RS04755 | 930513..930887 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BWI89_RS04760 | 930891..931763 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| BWI89_RS04765 | 931776..932117 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 932147..932415 | - | 269 | - | - | Antitoxin |
| - | 932275..932377 | + | 103 | - | - | Toxin |
| BWI89_RS04770 | 932512..933168 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| BWI89_RS04775 | 933169..933360 | - | 192 | WP_001317886.1 | YebW family protein | - |
| BWI89_RS04780 | 933465..933701 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BWI89_RS04785 | 933819..935258 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T72144 NZ_CP019273:932275-932377 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT72144 NZ_CP019273:c932415-932147 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
