Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3275804..3276075 | Replicon | chromosome |
| Accession | NZ_CP019267 | ||
| Organism | Escherichia coli strain 13C1079T | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3275842..3275945 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3275804..3276075 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI87_RS16865 | 3272961..3274400 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BWI87_RS16870 | 3274518..3274754 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BWI87_RS16875 | 3274859..3275050 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BWI87_RS16880 | 3275051..3275707 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3275804..3276075 | + | 272 | - | - | Antitoxin |
| - | 3275842..3275945 | - | 104 | - | - | Toxin |
| BWI87_RS16885 | 3276103..3276444 | - | 342 | WP_000976472.1 | YebY family protein | - |
| BWI87_RS16890 | 3276457..3277329 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| BWI87_RS16895 | 3277333..3277707 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BWI87_RS16900 | 3277846..3278076 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWI87_RS16905 | 3278178..3278834 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| BWI87_RS16910 | 3278858..3279520 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T72083 NZ_CP019267:c3275945-3275842 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72083 NZ_CP019267:3275804-3276075 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
