Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2416051..2416322 | Replicon | chromosome |
| Accession | NZ_CP019259 | ||
| Organism | Escherichia coli strain 13C1065T | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2416181..2416284 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2416051..2416322 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI86_RS12260 | 2412606..2413268 | - | 663 | WP_053882361.1 | exodeoxyribonuclease X | - |
| BWI86_RS12265 | 2413292..2413948 | - | 657 | WP_148116328.1 | carbon-nitrogen hydrolase family protein | - |
| BWI86_RS12270 | 2414050..2414280 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWI86_RS12275 | 2414419..2414793 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| BWI86_RS12280 | 2414797..2415669 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| BWI86_RS12285 | 2415682..2416023 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2416051..2416322 | - | 272 | - | - | Antitoxin |
| - | 2416181..2416284 | + | 104 | - | - | Toxin |
| BWI86_RS12290 | 2416419..2417075 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| BWI86_RS12295 | 2417076..2417267 | - | 192 | WP_001338167.1 | YebW family protein | - |
| BWI86_RS12300 | 2417372..2417608 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| BWI86_RS12305 | 2417726..2419165 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T72034 NZ_CP019259:2416181-2416284 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72034 NZ_CP019259:c2416322-2416051 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
