Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3769686..3769957 | Replicon | chromosome |
| Accession | NZ_CP019256 | ||
| Organism | Escherichia coli strain 13TMH22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3769816..3769919 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3769686..3769957 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI85_RS19420 | 3766241..3766903 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BWI85_RS19425 | 3766927..3767583 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BWI85_RS19430 | 3767685..3767915 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWI85_RS19435 | 3768054..3768428 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BWI85_RS19440 | 3768432..3769304 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| BWI85_RS19445 | 3769317..3769658 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3769686..3769957 | - | 272 | - | - | Antitoxin |
| - | 3769816..3769919 | + | 104 | - | - | Toxin |
| BWI85_RS19450 | 3770054..3770710 | + | 657 | WP_000812710.1 | protein-serine/threonine phosphatase | - |
| BWI85_RS19455 | 3770711..3770902 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BWI85_RS19460 | 3771007..3771243 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BWI85_RS19465 | 3771361..3772800 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T72018 NZ_CP019256:3769816-3769919 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72018 NZ_CP019256:c3769957-3769686 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
