Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2822533..2822804 | Replicon | chromosome |
| Accession | NZ_CP019250 | ||
| Organism | Escherichia coli strain 13KWH46 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2822663..2822766 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2822533..2822804 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI84_RS14580 | 2819088..2819750 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BWI84_RS14585 | 2819774..2820430 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BWI84_RS14590 | 2820532..2820762 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWI84_RS14595 | 2820901..2821275 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BWI84_RS14600 | 2821279..2822151 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| BWI84_RS14605 | 2822164..2822505 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2822533..2822804 | - | 272 | - | - | Antitoxin |
| - | 2822663..2822766 | + | 104 | - | - | Toxin |
| BWI84_RS14610 | 2822901..2823557 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| BWI84_RS14615 | 2823558..2823749 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BWI84_RS14620 | 2823854..2824090 | - | 237 | WP_148116966.1 | DUF1480 family protein | - |
| BWI84_RS14625 | 2824208..2825647 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T71979 NZ_CP019250:2822663-2822766 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT71979 NZ_CP019250:c2822804-2822533 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
