Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3681183..3681454 | Replicon | chromosome |
| Accession | NZ_CP019245 | ||
| Organism | Escherichia coli strain Combat13F7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3681313..3681416 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3681183..3681454 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI83_RS18730 | 3677738..3678400 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BWI83_RS18735 | 3678424..3679080 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| BWI83_RS18740 | 3679182..3679412 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWI83_RS18745 | 3679551..3679925 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| BWI83_RS18750 | 3679929..3680801 | + | 873 | WP_088213340.1 | copper homeostasis membrane protein CopD | - |
| BWI83_RS18755 | 3680814..3681155 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3681183..3681454 | - | 272 | - | - | Antitoxin |
| - | 3681313..3681416 | + | 104 | - | - | Toxin |
| BWI83_RS18760 | 3681551..3682072 | + | 522 | Protein_3402 | protein-serine/threonine phosphatase | - |
| BWI83_RS18770 | 3683369..3683521 | + | 153 | Protein_3404 | serine/threonine-protein phosphatase | - |
| BWI83_RS18775 | 3683522..3683713 | - | 192 | WP_001338167.1 | YebW family protein | - |
| BWI83_RS18780 | 3683818..3684054 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| BWI83_RS18785 | 3684172..3685611 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3675681..3688324 | 12643 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T71951 NZ_CP019245:3681313-3681416 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT71951 NZ_CP019245:c3681454-3681183 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
