Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 647567..647835 | Replicon | chromosome |
| Accession | NZ_CP019243 | ||
| Organism | Escherichia coli strain Combat2C1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 647605..647707 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 647567..647835 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI82_RS03495 | 644724..646163 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BWI82_RS03500 | 646281..646517 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BWI82_RS03505 | 646622..646813 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BWI82_RS03510 | 646814..647470 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 647567..647835 | + | 269 | - | - | Antitoxin |
| - | 647605..647707 | - | 103 | - | - | Toxin |
| BWI82_RS03515 | 647865..648206 | - | 342 | WP_000984819.1 | YebY family protein | - |
| BWI82_RS03520 | 648219..649091 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| BWI82_RS03525 | 649095..649469 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BWI82_RS03530 | 649608..649838 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWI82_RS03535 | 649941..650597 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| BWI82_RS03540 | 650621..651283 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 639337..726414 | 87077 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71906 NZ_CP019243:c647707-647605 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT71906 NZ_CP019243:647567-647835 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
