Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1868868..1869013 | Replicon | chromosome |
| Accession | NZ_CP019219 | ||
| Organism | Klebsiella pneumoniae strain 1756 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1868904..1869006 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1868868..1869013 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWG70_RS09510 | 1863998..1866058 | + | 2061 | WP_077274040.1 | oligopeptidase B | - |
| BWG70_RS09520 | 1866062..1866721 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BWG70_RS09525 | 1866800..1867030 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BWG70_RS09530 | 1867143..1867517 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BWG70_RS09535 | 1867521..1868390 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| BWG70_RS09540 | 1868407..1868745 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1868868..1869013 | - | 146 | - | - | Antitoxin |
| - | 1868904..1869006 | + | 103 | - | - | Toxin |
| BWG70_RS27710 | 1869381..1869524 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BWG70_RS09555 | 1869629..1870597 | - | 969 | WP_074181864.1 | VirK/YbjX family protein | - |
| BWG70_RS09560 | 1870754..1871407 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| BWG70_RS09565 | 1871404..1871595 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BWG70_RS09570 | 1871693..1871932 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BWG70_RS09575 | 1872048..1873481 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71838 NZ_CP019219:1868904-1869006 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT71838 NZ_CP019219:c1869013-1868868 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
