Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | ccdAB/CcdA(antitoxin) |
| Location | 50771..51296 | Replicon | plasmid pATCC39184 |
| Accession | NZ_CP019180 | ||
| Organism | Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 | ||
Toxin (Protein)
| Gene name | ccdB | Uniprot ID | I3W3D5 |
| Locus tag | BWD35_RS24910 | Protein ID | WP_001159863.1 |
| Coordinates | 50771..51076 (-) | Length | 102 a.a. |
Antitoxin (Protein)
| Gene name | ccdA | Uniprot ID | M7S5D0 |
| Locus tag | BWD35_RS24915 | Protein ID | WP_000813641.1 |
| Coordinates | 51078..51296 (-) | Length | 73 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWD35_RS24865 | 45899..46324 | - | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| BWD35_RS24870 | 46381..46740 | + | 360 | WP_001675600.1 | helix-turn-helix domain-containing protein | - |
| BWD35_RS24875 | 46807..47367 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| BWD35_RS24880 | 47579..47915 | - | 337 | Protein_60 | hypothetical protein | - |
| BWD35_RS24885 | 47909..48418 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| BWD35_RS24890 | 48422..49135 | - | 714 | WP_000545756.1 | EAL domain-containing protein | - |
| BWD35_RS24895 | 49144..49926 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| BWD35_RS24900 | 49961..50482 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| BWD35_RS24905 | 50479..50769 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| BWD35_RS24910 | 50771..51076 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin |
| BWD35_RS24915 | 51078..51296 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin |
| BWD35_RS24920 | 52041..52271 | + | 231 | WP_001261283.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| BWD35_RS24925 | 52268..52696 | + | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | - |
| BWD35_RS24940 | 53266..54114 | - | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| BWD35_RS25790 | 54140..54301 | - | 162 | WP_001816720.1 | hypothetical protein | - |
| BWD35_RS24945 | 54562..54774 | - | 213 | WP_000063794.1 | hypothetical protein | - |
| BWD35_RS24950 | 54847..55431 | - | 585 | WP_001575501.1 | hypothetical protein | - |
| BWD35_RS24955 | 55556..56269 | - | 714 | WP_000801115.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..74560 | 74560 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 a.a. Molecular weight: 15030.03 Da Isoelectric Point: 5.5500
>T71813 WP_001159863.1 NZ_CP019180:c51076-50771 [Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFF
Download Length: 306 bp
>T71813 NZ_CP019180:c51076-50771 [Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Antitoxin
Download Length: 73 a.a. Molecular weight: 10761.91 Da Isoelectric Point: 5.5500
>AT71813 WP_000813641.1 NZ_CP019180:c51296-51078 [Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
Download Length: 219 bp
>AT71813 NZ_CP019180:c51296-51078 [Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | I3W3D5 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A656ICA6 |