Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3373744..3373889 | Replicon | chromosome |
| Accession | NZ_CP019160 | ||
| Organism | Klebsiella pneumoniae strain GN-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3373751..3373853 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3373744..3373889 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BKY56_RS16945 | 3369275..3370708 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BKY56_RS16950 | 3370824..3371063 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BKY56_RS16955 | 3371161..3371352 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BKY56_RS16960 | 3371349..3372002 | - | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| BKY56_RS16965 | 3372159..3373127 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| BKY56_RS28495 | 3373232..3373375 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3373744..3373889 | + | 146 | - | - | Antitoxin |
| - | 3373751..3373853 | - | 103 | - | - | Toxin |
| BKY56_RS16975 | 3374012..3374350 | - | 339 | WP_075647430.1 | YebY family protein | - |
| BKY56_RS16980 | 3374367..3375236 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| BKY56_RS16985 | 3375240..3375614 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BKY56_RS16990 | 3375727..3375957 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BKY56_RS16995 | 3376036..3376695 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BKY56_RS17000 | 3376699..3378759 | - | 2061 | WP_077273935.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T71782 NZ_CP019160:c3373853-3373751 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT71782 NZ_CP019160:3373744-3373889 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
