Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YafN(antitoxin) |
| Location | 1684243..1684808 | Replicon | chromosome |
| Accession | NZ_CP019121 | ||
| Organism | Vibrio vulnificus strain FORC_054 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A0H2MSY5 |
| Locus tag | FORC54_RS07875 | Protein ID | WP_015296903.1 |
| Coordinates | 1684243..1684530 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U3BLE1 |
| Locus tag | FORC54_RS07880 | Protein ID | WP_000086647.1 |
| Coordinates | 1684527..1684808 (-) | Length | 94 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC54_RS07820 | 1680069..1680332 | - | 264 | Protein_1481 | transposase | - |
| FORC54_RS07825 | 1680403..1680672 | + | 270 | Protein_1482 | IS5/IS1182 family transposase | - |
| FORC54_RS07830 | 1680869..1681009 | - | 141 | WP_086467464.1 | DUF3265 domain-containing protein | - |
| FORC54_RS07845 | 1681483..1682256 | - | 774 | WP_038940865.1 | NERD domain-containing protein | - |
| FORC54_RS07850 | 1682286..1682378 | - | 93 | WP_199768205.1 | DUF3265 domain-containing protein | - |
| FORC54_RS07855 | 1682399..1682926 | - | 528 | WP_080540808.1 | hypothetical protein | - |
| FORC54_RS07860 | 1683093..1683623 | - | 531 | WP_086467591.1 | hypothetical protein | - |
| FORC54_RS07865 | 1683610..1683798 | - | 189 | WP_080540810.1 | DUF3265 domain-containing protein | - |
| FORC54_RS07870 | 1684123..1684215 | - | 93 | WP_072612521.1 | DUF3265 domain-containing protein | - |
| FORC54_RS07875 | 1684243..1684530 | - | 288 | WP_015296903.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| FORC54_RS07880 | 1684527..1684808 | - | 282 | WP_000086647.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| FORC54_RS07890 | 1685018..1685470 | - | 453 | WP_101958586.1 | hypothetical protein | - |
| FORC54_RS07895 | 1685481..1685639 | - | 159 | WP_180981941.1 | DUF3265 domain-containing protein | - |
| FORC54_RS07900 | 1685705..1686673 | + | 969 | WP_101958587.1 | IS30 family transposase | - |
| FORC54_RS07905 | 1686735..1687085 | - | 351 | WP_017420684.1 | hypothetical protein | - |
| FORC54_RS07910 | 1687297..1687938 | - | 642 | WP_101958588.1 | IS3 family transposase | - |
| FORC54_RS07915 | 1688232..1688453 | - | 222 | Protein_1497 | transposase | - |
| FORC54_RS07920 | 1689081..1689173 | - | 93 | WP_101958589.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | VP1611 | 1477413..1923771 | 446358 | |
| - | inside | Integron | - | - | 1680885..1885081 | 204196 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11003.69 Da Isoelectric Point: 5.1098
>T71766 WP_015296903.1 NZ_CP019121:c1684530-1684243 [Vibrio vulnificus]
MKVVWSPLALQKLGDAAEFISLDNPPAAEKWVNEVFDKTELLGSMPEMGRFVPEMPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQILSEDDV
MKVVWSPLALQKLGDAAEFISLDNPPAAEKWVNEVFDKTELLGSMPEMGRFVPEMPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQILSEDDV
Download Length: 288 bp
>T71766 NZ_CP019121:c1684530-1684243 [Vibrio vulnificus]
ATGAAAGTAGTCTGGTCTCCATTAGCACTTCAGAAACTAGGCGATGCAGCGGAGTTTATTTCTTTGGATAATCCACCTGC
GGCAGAGAAGTGGGTAAACGAAGTTTTTGATAAAACTGAACTCCTTGGAAGTATGCCTGAAATGGGGCGGTTTGTTCCTG
AAATGCCCCATACGAATTATCGCGAAATCATCTTTGGTCACTATCGTATTATCTACAGTTTAAGTCACGAAATTCGCGTA
CTAACAGTTCGTAATTGTCGTCAAATTTTATCGGAAGATGACGTCTAA
ATGAAAGTAGTCTGGTCTCCATTAGCACTTCAGAAACTAGGCGATGCAGCGGAGTTTATTTCTTTGGATAATCCACCTGC
GGCAGAGAAGTGGGTAAACGAAGTTTTTGATAAAACTGAACTCCTTGGAAGTATGCCTGAAATGGGGCGGTTTGTTCCTG
AAATGCCCCATACGAATTATCGCGAAATCATCTTTGGTCACTATCGTATTATCTACAGTTTAAGTCACGAAATTCGCGTA
CTAACAGTTCGTAATTGTCGTCAAATTTTATCGGAAGATGACGTCTAA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10398.91 Da Isoelectric Point: 5.8650
>AT71766 WP_000086647.1 NZ_CP019121:c1684808-1684527 [Vibrio vulnificus]
MSRIHFDQDIQPLSEFRAGVASYIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLASGLGVSN
DDARAQVLGRIKK
MSRIHFDQDIQPLSEFRAGVASYIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLASGLGVSN
DDARAQVLGRIKK
Download Length: 282 bp
>AT71766 NZ_CP019121:c1684808-1684527 [Vibrio vulnificus]
ATGAGTCGTATTCATTTCGATCAAGATATTCAGCCTTTGTCTGAGTTTCGTGCCGGTGTAGCTTCATATATCAAACAGAT
CAATGAGACTCGTCGTCCATTGGTTATTACGCAACGTGGCAAAGGTGTTGCTGTTGTTCTTGATGTTGCTGAGTATGAAG
CAATGCAAGAGAAAATCGAATTACTGGAAGAAATGCGCACAGCAGAAGCTCAGTTAGCTTCTGGTCTCGGTGTTTCCAAT
GATGATGCGCGTGCTCAAGTACTTGGGCGCATTAAGAAATGA
ATGAGTCGTATTCATTTCGATCAAGATATTCAGCCTTTGTCTGAGTTTCGTGCCGGTGTAGCTTCATATATCAAACAGAT
CAATGAGACTCGTCGTCCATTGGTTATTACGCAACGTGGCAAAGGTGTTGCTGTTGTTCTTGATGTTGCTGAGTATGAAG
CAATGCAAGAGAAAATCGAATTACTGGAAGAAATGCGCACAGCAGAAGCTCAGTTAGCTTCTGGTCTCGGTGTTTCCAAT
GATGATGCGCGTGCTCAAGTACTTGGGCGCATTAAGAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0H2MSY5 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A4P8G0X0 |